Mercurial > repos > gga > genenotebook_genenotebook_build

annotate test-data/annot.gff @ 4:ace14a8ac6e4 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 81226a2f347b2dc273546311e7269c07f0b0f485
author gga
date Tue, 10 Oct 2023 15:29:02 +0000
parents 22f22c3e81bf
children
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22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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diff changeset
1 ##gff-version 3
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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2 scaffold_1 funannotate gene 300 1158 . - . ID=MMUCEDO_000001;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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diff changeset
3 scaffold_1 funannotate mRNA 300 1158 . - . ID=MMUCEDO_000001-T1;Parent=MMUCEDO_000001;product=hypothetical protein;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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4 scaffold_1 funannotate exon 880 1158 . - . ID=MMUCEDO_000001-T1.exon1;Parent=MMUCEDO_000001-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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5 scaffold_1 funannotate exon 407 800 . - . ID=MMUCEDO_000001-T1.exon2;Parent=MMUCEDO_000001-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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6 scaffold_1 funannotate exon 300 309 . - . ID=MMUCEDO_000001-T1.exon3;Parent=MMUCEDO_000001-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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7 scaffold_1 funannotate CDS 880 1158 . - 0 ID=MMUCEDO_000001-T1.cds;Parent=MMUCEDO_000001-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff changeset
8 scaffold_1 funannotate CDS 407 800 . - 0 ID=MMUCEDO_000001-T1.cds;Parent=MMUCEDO_000001-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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9 scaffold_1 funannotate CDS 300 309 . - 2 ID=MMUCEDO_000001-T1.cds;Parent=MMUCEDO_000001-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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10 scaffold_1 funannotate gene 4621 5580 . + . ID=MMUCEDO_000002;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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11 scaffold_1 funannotate mRNA 4621 5580 . + . ID=MMUCEDO_000002-T1;Parent=MMUCEDO_000002;product=hypothetical protein;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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12 scaffold_1 funannotate exon 4621 4715 . + . ID=MMUCEDO_000002-T1.exon1;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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13 scaffold_1 funannotate exon 4812 5100 . + . ID=MMUCEDO_000002-T1.exon2;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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14 scaffold_1 funannotate exon 5185 5250 . + . ID=MMUCEDO_000002-T1.exon3;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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15 scaffold_1 funannotate exon 5312 5375 . + . ID=MMUCEDO_000002-T1.exon4;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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16 scaffold_1 funannotate exon 5457 5488 . + . ID=MMUCEDO_000002-T1.exon5;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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17 scaffold_1 funannotate exon 5557 5580 . + . ID=MMUCEDO_000002-T1.exon6;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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18 scaffold_1 funannotate CDS 4621 4715 . + 0 ID=MMUCEDO_000002-T1.cds;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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19 scaffold_1 funannotate CDS 4812 5100 . + 1 ID=MMUCEDO_000002-T1.cds;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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diff changeset
20 scaffold_1 funannotate CDS 5185 5250 . + 0 ID=MMUCEDO_000002-T1.cds;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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21 scaffold_1 funannotate CDS 5312 5375 . + 0 ID=MMUCEDO_000002-T1.cds;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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22 scaffold_1 funannotate CDS 5457 5488 . + 2 ID=MMUCEDO_000002-T1.cds;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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23 scaffold_1 funannotate CDS 5557 5580 . + 0 ID=MMUCEDO_000002-T1.cds;Parent=MMUCEDO_000002-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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24 scaffold_1 funannotate gene 6121 6864 . + . ID=MMUCEDO_000003;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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25 scaffold_1 funannotate mRNA 6121 6864 . + . ID=MMUCEDO_000003-T1;Parent=MMUCEDO_000003;product=hypothetical protein;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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26 scaffold_1 funannotate exon 6121 6146 . + . ID=MMUCEDO_000003-T1.exon1;Parent=MMUCEDO_000003-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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27 scaffold_1 funannotate exon 6198 6219 . + . ID=MMUCEDO_000003-T1.exon2;Parent=MMUCEDO_000003-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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28 scaffold_1 funannotate exon 6348 6358 . + . ID=MMUCEDO_000003-T1.exon3;Parent=MMUCEDO_000003-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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29 scaffold_1 funannotate exon 6447 6864 . + . ID=MMUCEDO_000003-T1.exon4;Parent=MMUCEDO_000003-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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30 scaffold_1 funannotate CDS 6121 6146 . + 0 ID=MMUCEDO_000003-T1.cds;Parent=MMUCEDO_000003-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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31 scaffold_1 funannotate CDS 6198 6219 . + 1 ID=MMUCEDO_000003-T1.cds;Parent=MMUCEDO_000003-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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32 scaffold_1 funannotate CDS 6348 6358 . + 0 ID=MMUCEDO_000003-T1.cds;Parent=MMUCEDO_000003-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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33 scaffold_1 funannotate CDS 6447 6864 . + 1 ID=MMUCEDO_000003-T1.cds;Parent=MMUCEDO_000003-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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34 scaffold_1 funannotate gene 6889 7683 . + . ID=MMUCEDO_000004;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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35 scaffold_1 funannotate mRNA 6889 7683 . + . ID=MMUCEDO_000004-T1;Parent=MMUCEDO_000004;product=hypothetical protein;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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36 scaffold_1 funannotate exon 6889 7683 . + . ID=MMUCEDO_000004-T1.exon1;Parent=MMUCEDO_000004-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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37 scaffold_1 funannotate CDS 6889 7683 . + 0 ID=MMUCEDO_000004-T1.cds;Parent=MMUCEDO_000004-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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38 scaffold_1 funannotate gene 9569 10657 . + . ID=MMUCEDO_000005;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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39 scaffold_1 funannotate mRNA 9569 10657 . + . ID=MMUCEDO_000005-T1;Parent=MMUCEDO_000005;product=hypothetical protein;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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40 scaffold_1 funannotate exon 9569 9699 . + . ID=MMUCEDO_000005-T1.exon1;Parent=MMUCEDO_000005-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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41 scaffold_1 funannotate exon 9763 9850 . + . ID=MMUCEDO_000005-T1.exon2;Parent=MMUCEDO_000005-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
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42 scaffold_1 funannotate exon 9908 10657 . + . ID=MMUCEDO_000005-T1.exon3;Parent=MMUCEDO_000005-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff changeset
43 scaffold_1 funannotate CDS 9569 9699 . + 0 ID=MMUCEDO_000005-T1.cds;Parent=MMUCEDO_000005-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff changeset
44 scaffold_1 funannotate CDS 9763 9850 . + 1 ID=MMUCEDO_000005-T1.cds;Parent=MMUCEDO_000005-T1;
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff changeset
45 scaffold_1 funannotate CDS 9908 10657 . + 0 ID=MMUCEDO_000005-T1.cds;Parent=MMUCEDO_000005-T1;