annotate macros.xml @ 1:4065bcff8e85 draft default tip

"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit 3500c1e606a902b492180db3e2e0c2ee07c90e8b"
author gga
date Tue, 27 Apr 2021 12:49:22 +0000
parents 11033bdad2ca
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
1 <?xml version="1.0"?>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
2 <macros>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
3 <xml name="requirements">
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
4 <requirements>
1
4065bcff8e85 "planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit 3500c1e606a902b492180db3e2e0c2ee07c90e8b"
gga
parents: 0
diff changeset
5 <requirement type="package" version="3.8">python</requirement>
0
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
6 <yield/>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
7 </requirements>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
8 </xml>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
9
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
10 <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
11 <token name="@JBROWSE_BASE_URL@">\$GALAXY_JBROWSE_SHARED_URL</token>
1
4065bcff8e85 "planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit 3500c1e606a902b492180db3e2e0c2ee07c90e8b"
gga
parents: 0
diff changeset
12 <token name="@WRAPPER_VERSION@">0.5.2</token>
0
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
13
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
14 <xml name="stdio">
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
15 <stdio>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
16 <exit_code range="1:"/>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
17 <exit_code range=":-1"/>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
18 <regex match="Error:"/>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
19 <regex match="Exception:"/>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
20 </stdio>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
21 </xml>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
22
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
23 <token name="@ATTRIBUTION@"><![CDATA[
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
24 **Attribution**
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
25
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
26 This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by Eric Rasche
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
27 ]]>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
28 </token>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
29
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
30 <xml name="citations">
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
31 <citations>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
32 <citation type="doi">10.1101/gr.094607.109</citation>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
33 </citations>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
34 </xml>
11033bdad2ca planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
35 </macros>