Mercurial > repos > gga > jbrowse_to_container
view jbrowse_to_container.py @ 0:11033bdad2ca draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
author | gga |
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date | Mon, 11 Sep 2017 05:49:16 -0400 |
parents | |
children | 4065bcff8e85 |
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#!/usr/bin/env python from __future__ import print_function import argparse import base64 if __name__ == '__main__': parser = argparse.ArgumentParser(description='Generates an iframe to access a jbrowse instance') parser.add_argument('external_jbrowse_url', help='Jbrowse full URL') args = parser.parse_args() # This is base64 encoded to get past the toolshed's filters. HTML_TPL = """ PGh0bWw+PGhlYWQ+PHRpdGxlPkVtYmVkZGVkIEpCcm93c2UgQWNjZXNzPC90aXRsZT48c3R5bGUg dHlwZT0idGV4dC9jc3MiPmJvZHkge3ttYXJnaW46IDA7fX0gaWZyYW1lIHt7Ym9yZGVyOiAwO3dp ZHRoOiAxMDAlO2hlaWdodDogMTAwJX19PC9zdHlsZT48L2hlYWQ+PGJvZHk+PGlmcmFtZSBzcmM9 IntiYXNlX3VybH0iPjwvaWZyYW1lPjwvYm9keT48L2h0bWw+DQo= """ HTML_TPL = base64.b64decode(HTML_TPL.replace('\n', '')) print(HTML_TPL.format(base_url=args.external_jbrowse_url))