annotate entity_publish.xml @ 0:fd775ed5c129 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a

<?xml version="1.0"?>
<tool id="entity_publish" name="Publish entities" version="@WRAPPER_VERSION@.0">
 <description>in Tripal</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <command detect_errors="aggressive"><![CDATA[
tripaille entity publish

#for $rep in $repeat_types:
  --types '$rep.types'
#end for

| jq -S . > $results
]]></command>
    <inputs>
        <!-- arguments -->

        <!-- options -->
        <repeat name="repeat_types" title="types">
            <param name="types" label="Types" argument="types" type="text" help="List of entity types to be published (e.g. Gene mRNA, default: all)" />
        </repeat>

    </inputs>
    <outputs>
        <data format="json" name="results"/>
    </outputs>
    <help>
Publish entities (Tripal 3 only)

@HELP@
    </help>
</tool>