annotate expression_delete_biomaterials.xml @ 0:939ae64500f9 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 690532f4a8e36a334b2d4e15b832532fc1bb8d39

<?xml version="1.0"?>
<tool id="expression_delete_biomaterials" name="Delete biomaterials" version="@WRAPPER_VERSION@.0">
 <description>from Tripal</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <code file="tripal.py"/>
    <command detect_errors="aggressive"><![CDATA[
@AUTH@

tripaille expression delete_biomaterials

#if $names:
  --names '$names'
#end if
#if $organism_id:
  --organism_id '$organism_id'
#end if
#if $analysis_id:
  --analysis_id '$analysis_id'
#end if

&&

echo "Data loaded" > $results
]]></command>
    <inputs>
        <!-- arguments -->

        <!-- options -->
        <param name="names" label="Names" argument="names" type="text" help="JSON list of biomaterial names to delete." optional="true">
            <expand macro="sanitized"/>
        </param>

        <param argument="--organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" />
        <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" optional="true" />

    </inputs>
    <outputs>
        <data format="txt" name="results"/>
    </outputs>
    <help>
Delete some biomaterials

@HELP@
    </help>
</tool>