Mercurial > repos > gianmarco_piccinno > project_rm

comparison codon_usage.xml @ 23:d5f3af031b16 draft

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author fabio
date Tue, 11 Dec 2018 12:16:00 -0500
parents 21b35ba256d9
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22:418dc4a1a5c7 23:d5f3af031b16
1 <tool id="codon_usage" name="Codon Usage" version="0.1.1"> 1 <tool id="codon_usage" name="Codon Usage" version="0.2.0">
2 <description>for each sequence in a file</description> 2 <description>for each sequence in a file</description>
3 <requirements> 3 <requirements>
4 <requirement type=“package” version=“3.6.0”>python</requirement> 4 <requirement type=“package” version=“3.6.0”>python</requirement>
5 <requirement type=“package” version=“1.72”>biopython</requirement> 5 <requirement type=“package” version=“1.72”>biopython</requirement>
6 <requirement type=“package” version=“0.23.4”>pandas</requirement> 6 <requirement type=“package” version=“0.23.4”>pandas</requirement>
21 <option value="Archaeal"> Archaeal</option> 21 <option value="Archaeal"> Archaeal</option>
22 <option value="Bacterial">Bacterial</option> 22 <option value="Bacterial">Bacterial</option>
23 <option value="Standard">Standard</option> 23 <option value="Standard">Standard</option>
24 24
25 </param> 25 </param>
26
27 </inputs> 26 </inputs>
28
29
30 27
31 <outputs> 28 <outputs>
32 <data format="tabular" name="output" /> 29 <data format="tabular" name="output" />
33 </outputs> 30 </outputs>
34 31
35 <tests>
36 <test>
37 <param name="input" value="fa_gc_content_input.fa"/>
38 <output name="out_file1" file="fa_gc_content_output.txt"/>
39 </test>
40 </tests>
41
42 <help> 32 <help>
43 This tool compute codon usage of an annotated genome [preferably Prokaryotes]. 33 This tool compute codon usage of an annotated genome [preferably Prokaryotes].
44 </help> 34 </help>
45 </tool> 35 </tool>