Mercurial > repos > gianmarco_piccinno > project_rm

changeset 23:d5f3af031b16 draft

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Uploaded
author fabio
date Tue, 11 Dec 2018 12:16:00 -0500
parents 418dc4a1a5c7
children f90250cf3169
files ._.shed.yml ._codon_usage.py ._codon_usage.xml .shed.yml codon_usage.py codon_usage.xml
diffstat 5 files changed, 12 insertions(+), 11 deletions(-) [+]
line wrap: on
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Binary file ._.shed.yml has changed
Binary file ._codon_usage.py has changed
Binary file ._codon_usage.xml has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/.shed.yml	Tue Dec 11 12:16:00 2018 -0500
@@ -0,0 +1,11 @@
+name: codon_usage
+owner: gianmarco_piccinno
+categories:
+  - Text Manipulation
+description: RM-tool
+long_description: |
+  RM-tool - dev
+type: unrestricted
+auto_tool_repositories:
+  name_template: "{{ tool_id }}"
+  descriptor_template: "Wrapper for Codon Usage application: {{ tool_name }}."
\ No newline at end of file
--- a/codon_usage.xml	Tue Dec 11 11:50:53 2018 -0500
+++ b/codon_usage.xml	Tue Dec 11 12:16:00 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="codon_usage" name="Codon Usage" version="0.1.1">
+<tool id="codon_usage" name="Codon Usage" version="0.2.0">
   <description>for each sequence in a file</description>
   <requirements>
     <requirement type=“package” version=“3.6.0”>python</requirement>
@@ -23,22 +23,12 @@
         <option value="Standard">Standard</option>
         
 		</param>
-
   </inputs>
 
-
-
   <outputs>
     <data format="tabular" name="output" />
   </outputs>
 
-  <tests>
-    <test>
-      <param name="input" value="fa_gc_content_input.fa"/>
-      <output name="out_file1" file="fa_gc_content_output.txt"/>
-    </test>
-  </tests>
-
   <help>
 This tool compute codon usage of an annotated genome [preferably Prokaryotes].
   </help>