Mercurial > repos > gkumar09 > trinityrnaseq_protocol

changeset 9:32b2ed082d0c draft

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Uploaded
author gkumar09
date Wed, 23 Sep 2015 15:22:38 -0400
parents e40d92918044
children adf57ab6155e
files cat.xml
diffstat 1 files changed, 41 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cat.xml	Wed Sep 23 15:22:38 2015 -0400
@@ -0,0 +1,41 @@
+<tool id="catbash" name="Concatenate datasets">
+    <description>tail-to-head</description>
+    <command interpreter="python">
+        bash_command_executer.py cat
+        $input1
+        #for $q in $queries
+            ${q.input2}
+        #end for
+        > $out_file1 
+    </command>
+    <inputs>
+        <param name="input1" type="data" label="Concatenate Dataset"/>
+        <repeat name="queries" title="Dataset">
+            <param name="input2" type="data" label="Select" />
+        </repeat>
+    </inputs>
+    <outputs>
+        <data name="out_file1" format="input" metadata_source="input1"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input1" value="1.bed"/>
+            <param name="input2" value="2.bed"/>
+            <output name="out_file1" file="cat_wrapper_out1.bed"/>
+        </test>
+        <!--TODO: if possible, enhance the underlying test code to handle this test
+            the problem is multiple params with the same name "input2"
+        <test>
+            <param name="input1" value="1.bed"/>
+            <param name="input2" value="2.bed"/>
+            <param name="input2" value="3.bed"/>
+            <output name="out_file1" file="cat_wrapper_out2.bed"/>
+        </test>
+        -->
+    </tests>
+    <help>
+
+    no help
+
+    </help>
+</tool>