Mercurial > repos > goeckslab > cell_intensity_processing
changeset 2:7f93f472a242 draft
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mti-utils commit 130ef7e8ae6cab35866b72617e53d35acc11475a
| author | goeckslab |
|---|---|
| date | Wed, 28 Feb 2024 20:52:16 +0000 |
| parents | 7a77ed0e579a |
| children | 4f5abe01531c |
| files | macros.xml process_intensities.xml |
| diffstat | 2 files changed, 8 insertions(+), 5 deletions(-) [+] |
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--- a/macros.xml Wed Oct 05 20:38:54 2022 +0000 +++ b/macros.xml Wed Feb 28 20:52:16 2024 +0000 @@ -11,10 +11,11 @@ </xml> <xml name="citations"> <citations> + <citation type="doi">10.1101/2022.08.18.504436</citation> </citations> </xml> <token name="@TOOL_VERSION@">0.0.1</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">3</token> <token name="@PROFILE@">19.01</token> </macros>
--- a/process_intensities.xml Wed Oct 05 20:38:54 2022 +0000 +++ b/process_intensities.xml Wed Feb 28 20:52:16 2024 +0000 @@ -1,8 +1,11 @@ <tool id="cell_intensity_processing" name="Process single-cell intensities" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> - <description>Options to correct for exposure time, autofluorescence subtraction, or compute signal-to-background ratio.</description> + <description></description> <macros> <import>macros.xml</import> </macros> + <edam_operations> + <edam_operation>operation_3443</edam_operation> + </edam_operations> <expand macro="requirements" /> <command detect_errors="aggressive"><![CDATA[ @@ -109,8 +112,7 @@ 3. Signal-to-background ratio - Divide single-cell mmean marker intensities by respective AF/bg channel mean intensity specified in channel metadata **Outputs** -1. Feature observation matrix with processed intensities for all markers in channel metadata file. - CellIDs, centroids, and morphological data remain unchanged. +1. Feature observation matrix with processed intensities for all markers in channel metadata file. CellIDs, centroids, and morphological data remain unchanged. ]]></help> <expand macro="citations" /> -</tool> \ No newline at end of file +</tool>