diff macros.xml @ 1:02abff468d60 draft

planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371

--- a/macros.xml	Thu Sep 08 15:17:30 2022 +0000
+++ b/macros.xml	Thu Nov 10 20:38:34 2022 +0000
@@ -5,7 +5,26 @@
             <container type="docker">quay.io/goeckslab/mesmer:@TOOL_VERSION@</container>
         </requirements>
     </xml>
-
+    <xml name="stdio">
+        <stdio>
+            <regex match="MemoryError"
+               source="both"
+               level="fatal_oom"
+               description="Out of Memory" />
+            <regex match="std::bad_alloc"
+               source="both"
+               level="fatal_oom"
+               description="Out of Memory" />
+            <regex match="java.lang.OutOfMemoryError"
+               source="both"
+               level="fatal_oom"
+               description="Out of Memory" />
+            <regex match="Out of memory"
+               source="both"
+               level="fatal_oom"
+               description="Out of Memory" />
+        </stdio>
+    </xml>
     <xml name="version_cmd">
         <version_command>@CMD_BEGIN@ --help</version_command>
     </xml>
@@ -16,6 +35,6 @@
     </xml>
 
     <token name="@TOOL_VERSION@">0.3.1</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@CMD_BEGIN@">python /usr/src/app/run_app.py mesmer</token>
 </macros>