annotate macros.xml @ 1:02abff468d60 draft

planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371

<?xml version="1.0"?>
<macros>
    <xml name="requirements">
        <requirements>
            <container type="docker">quay.io/goeckslab/mesmer:@TOOL_VERSION@</container>
        </requirements>
    </xml>
    <xml name="stdio">
        <stdio>
            <regex match="MemoryError"
               source="both"
               level="fatal_oom"
               description="Out of Memory" />
            <regex match="std::bad_alloc"
               source="both"
               level="fatal_oom"
               description="Out of Memory" />
            <regex match="java.lang.OutOfMemoryError"
               source="both"
               level="fatal_oom"
               description="Out of Memory" />
            <regex match="Out of memory"
               source="both"
               level="fatal_oom"
               description="Out of Memory" />
        </stdio>
    </xml>
    <xml name="version_cmd">
        <version_command>@CMD_BEGIN@ --help</version_command>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1038/s41587-021-01094-0</citation>
        </citations>
    </xml>

    <token name="@TOOL_VERSION@">0.3.1</token>
    <token name="@VERSION_SUFFIX@">1</token>
    <token name="@CMD_BEGIN@">python /usr/src/app/run_app.py mesmer</token>
</macros>