Mercurial > repos > goeckslab > tabular_learner

annotate utils.py @ 2:77c88226bfde draft

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planemo upload for repository https://github.com/goeckslab/gleam commit 06c0da44ac93256dfb616a6b40276b5485a71e8e
author goeckslab
date Wed, 02 Jul 2025 18:59:39 +0000
parents 209b663a4f62
children 11fdac5affb3
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209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
goeckslab
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1 import base64
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
goeckslab
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2 import logging
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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3
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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4 import numpy as np
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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5
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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6 logging.basicConfig(level=logging.DEBUG)
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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7 LOG = logging.getLogger(__name__)
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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9
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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10 def get_html_template():
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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11 return """
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
goeckslab
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12 <html>
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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13 <head>
2
77c88226bfde planemo upload for repository https://github.com/goeckslab/gleam commit 06c0da44ac93256dfb616a6b40276b5485a71e8e
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14 <meta charset="UTF-8">
0
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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15 <title>Model Training Report</title>
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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16 <style>
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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17 body {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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18 font-family: Arial, sans-serif;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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19 margin: 0;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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20 padding: 20px;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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21 background-color: #f4f4f4;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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22 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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23 .container {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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24 max-width: 800px;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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25 margin: auto;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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26 background: white;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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27 padding: 20px;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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28 box-shadow: 0 0 10px rgba(0, 0, 0, 0.1);
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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29 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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30 h1 {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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31 text-align: center;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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32 color: #333;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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33 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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34 h2 {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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35 border-bottom: 2px solid #4CAF50;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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36 color: #4CAF50;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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37 padding-bottom: 5px;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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38 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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39 table {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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40 width: 100%;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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41 border-collapse: collapse;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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42 margin: 20px 0;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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43 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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44 table, th, td {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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45 border: 1px solid #ddd;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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46 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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47 th, td {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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48 padding: 8px;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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49 text-align: left;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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50 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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51 th {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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52 background-color: #4CAF50;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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53 color: white;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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54 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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55 .plot {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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56 text-align: center;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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57 margin: 20px 0;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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58 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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59 .plot img {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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60 max-width: 100%;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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61 height: auto;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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62 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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63 .tabs {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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64 display: flex;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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65 margin-bottom: 20px;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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66 cursor: pointer;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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67 justify-content: space-around;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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68 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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69 .tab {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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70 padding: 10px;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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71 background-color: #4CAF50;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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72 color: white;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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73 border-radius: 5px 5px 0 0;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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74 flex-grow: 1;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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75 text-align: center;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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76 margin: 0 5px;
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77 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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78 .tab.active-tab {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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79 background-color: #333;
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80 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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81 .tab-content {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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82 display: none;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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83 padding: 20px;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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84 border: 1px solid #ddd;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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85 border-top: none;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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86 background-color: white;
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87 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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88 .tab-content.active-content {
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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89 display: block;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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90 }
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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91 </style>
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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92 </head>
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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93 <body>
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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94 <div class="container">
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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95 """
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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96
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97
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98 def get_html_closing():
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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99 return """
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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100 </div>
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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101 <script>
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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102 function openTab(evt, tabName) {{
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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103 var i, tabcontent, tablinks;
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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104 tabcontent = document.getElementsByClassName("tab-content");
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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105 for (i = 0; i < tabcontent.length; i++) {{
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106 tabcontent[i].style.display = "none";
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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107 }}
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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108 tablinks = document.getElementsByClassName("tab");
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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109 for (i = 0; i < tablinks.length; i++) {{
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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110 tablinks[i].className =
209b663a4f62 planemo upload for repository https://github.com/goeckslab/gleam commit 5dd048419fcbd285a327f88267e93996cd279ee6
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111 tablinks[i].className.replace(" active-tab", "");
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112 }}
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113 document.getElementById(tabName).style.display = "block";
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114 evt.currentTarget.className += " active-tab";
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115 }}
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116 document.addEventListener("DOMContentLoaded", function() {{
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117 document.querySelector(".tab").click();
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118 }});
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119 </script>
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120 </body>
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121 </html>
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122 """
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123
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124
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125 def customize_figure_layout(fig, margin_dict=None):
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126 """
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127 Update the layout of a Plotly figure to reduce margins.
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128
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129 Parameters:
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130 fig (plotly.graph_objects.Figure): The Plotly figure to customize.
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131 margin_dict (dict, optional): A dictionary specifying margin sizes.
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132 Example: {'l': 10, 'r': 10, 't': 10, 'b': 10}
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133
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134 Returns:
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135 plotly.graph_objects.Figure: The updated Plotly figure.
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136 """
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137 if margin_dict is None:
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138 # Set default smaller margins
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139 margin_dict = {'l': 40, 'r': 40, 't': 40, 'b': 40}
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140
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141 fig.update_layout(margin=margin_dict)
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142 return fig
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143
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144
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145 def add_plot_to_html(fig, include_plotlyjs=True):
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146 custom_margin = {'l': 40, 'r': 40, 't': 60, 'b': 60}
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147 fig = customize_figure_layout(fig, margin_dict=custom_margin)
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148 return fig.to_html(full_html=False,
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149 default_height=350,
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150 include_plotlyjs="cdn" if include_plotlyjs else False)
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151
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152
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153 def add_hr_to_html():
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154 return "<hr>"
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155
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156
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157 def encode_image_to_base64(image_path):
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158 """Convert an image file to a base64 encoded string."""
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159 with open(image_path, "rb") as img_file:
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160 return base64.b64encode(img_file.read()).decode("utf-8")
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161
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162
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163 def predict_proba(self, X):
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164 pred = self.predict(X)
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165 return np.array([1 - pred, pred]).T