Mercurial > repos > greg > call_amr_mutations

changeset 4:2774bdf30122 draft

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Uploaded
author greg
date Tue, 21 Mar 2023 19:32:25 +0000
parents 30b17a17c1aa
children bafbed02fdd2
files call_amr_mutations.xml
diffstat 1 files changed, 1 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/call_amr_mutations.xml	Tue Mar 21 19:26:55 2023 +0000
+++ b/call_amr_mutations.xml	Tue Mar 21 19:32:25 2023 +0000
@@ -5,10 +5,7 @@
     </macros>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
-## NOTE: This tool provides the functionality of the PIMA filter_varsacn()
-## function here https://github.com/appliedbinf/pima_md/blob/main/pima.py#L3012
-
-python '$__tool_directory__/filter_varscan.py'
+python '$__tool_directory__/call_amr_mutations.py'
 --varscan_raw '$varscan_raw'
 --output '$output'
 ]]></command>