Mercurial > repos > greg > cfsan_snp_pipeline_call_sites

changeset 1:9ab66ea409ff draft

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Uploaded
author greg
date Tue, 21 Nov 2023 22:08:55 +0000
parents 02ab4f93ebd0
children 991fbae39ee6
files cfsan_snp_pipeline_call_sites.xml
diffstat 1 files changed, 5 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/cfsan_snp_pipeline_call_sites.xml	Tue Nov 21 21:04:31 2023 +0000
+++ b/cfsan_snp_pipeline_call_sites.xml	Tue Nov 21 22:08:55 2023 +0000
@@ -15,10 +15,9 @@
         <param name="reference" label="FASTA Reference from your history" type="data" format="fasta"/>
     </inputs>
     <outputs>
-        <data name="calls" label="${input.name.split(' ')[0]} unfiltered SNPs" format="vcf"/>
-        <data name="pileup" label="${input.name.split(' ')[0]} pileup" format="pileup"/>
-        <data name="metrics" label="Metrics from Picard" format="txt"/>
-        <data label="S3 Cache log" name="cache_log" format="txt"/>
+        <data name="calls" label="Call Sites (unfiltered SNPs)" format="vcf"/>
+        <data name="pileup" label="Call Sites (pileup)" format="pileup"/>
+        <data name="metrics" label="Call sites (Picard metrics)" format="txt"/>
     </outputs>
     <tests>
         <test>
@@ -27,12 +26,12 @@
             <output name="calls" ftype="vcf">
                 <assert_contents>
                     <has_size value="9976" delta="100"/>
-        </assert_contents>
+                </assert_contents>
             </output>
             <output name="pileup" ftype="pileup">
                 <assert_contents>
                     <has_size value="4259620" delta="100"/>
-        </assert_contents>
+                </assert_contents>
             </output>
         </test>
     </tests>