Mercurial > repos > greg > cfsan_snp_pipeline_call_sites
changeset 1:9ab66ea409ff draft
Uploaded
author | greg |
---|---|
date | Tue, 21 Nov 2023 22:08:55 +0000 (13 months ago) |
parents | 02ab4f93ebd0 |
children | 991fbae39ee6 |
files | cfsan_snp_pipeline_call_sites.xml |
diffstat | 1 files changed, 5 insertions(+), 6 deletions(-) [+] |
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--- a/cfsan_snp_pipeline_call_sites.xml Tue Nov 21 21:04:31 2023 +0000 +++ b/cfsan_snp_pipeline_call_sites.xml Tue Nov 21 22:08:55 2023 +0000 @@ -15,10 +15,9 @@ <param name="reference" label="FASTA Reference from your history" type="data" format="fasta"/> </inputs> <outputs> - <data name="calls" label="${input.name.split(' ')[0]} unfiltered SNPs" format="vcf"/> - <data name="pileup" label="${input.name.split(' ')[0]} pileup" format="pileup"/> - <data name="metrics" label="Metrics from Picard" format="txt"/> - <data label="S3 Cache log" name="cache_log" format="txt"/> + <data name="calls" label="Call Sites (unfiltered SNPs)" format="vcf"/> + <data name="pileup" label="Call Sites (pileup)" format="pileup"/> + <data name="metrics" label="Call sites (Picard metrics)" format="txt"/> </outputs> <tests> <test> @@ -27,12 +26,12 @@ <output name="calls" ftype="vcf"> <assert_contents> <has_size value="9976" delta="100"/> - </assert_contents> + </assert_contents> </output> <output name="pileup" ftype="pileup"> <assert_contents> <has_size value="4259620" delta="100"/> - </assert_contents> + </assert_contents> </output> </test> </tests>