Mercurial > repos > greg > cfsan_snp_pipeline_merge_sites

changeset 1:1013b32b325a draft

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Uploaded
author greg
date Fri, 13 Oct 2023 15:37:28 +0000
parents 201984e0cab2
children b64c03573271
files cfsan_snp_pipeline_merge_sites.xml test-data/output.tabular test-data/output2.tabular
diffstat 3 files changed, 216 insertions(+), 166 deletions(-) [+]
line wrap: on
line diff
--- a/cfsan_snp_pipeline_merge_sites.xml	Fri Oct 13 14:20:19 2023 +0000
+++ b/cfsan_snp_pipeline_merge_sites.xml	Fri Oct 13 15:37:28 2023 +0000
@@ -26,6 +26,10 @@
     </outputs>
     <tests>
         <test>
+            <param name="input_vcf" value="input1.vcf"/>
+            <output name="output" value="output.tabular"/>
+        </test>
+        <test>
             <param name="input_type" value="collection"/>
             <param name="input_vcf_collection">
                 <collection type="list">
@@ -35,7 +39,7 @@
                     <element name="input4" value="input4.vcf" ftype="vcf"/>
                 </collection>
             </param>
-            <output name="output" value="output.tabular"/>
+            <output name="output" value="output2.tabular"/>
         </test>
     </tests>
     <help><![CDATA[
--- a/test-data/output.tabular	Fri Oct 13 14:20:19 2023 +0000
+++ b/test-data/output.tabular	Fri Oct 13 15:37:28 2023 +0000
@@ -1,165 +1,46 @@
-gi|9626243|ref|NC_001416.1|	403	1	input1
-gi|9626243|ref|NC_001416.1|	550	1	input4
-gi|9626243|ref|NC_001416.1|	586	1	input4
-gi|9626243|ref|NC_001416.1|	753	1	input1
-gi|9626243|ref|NC_001416.1|	1019	1	input4
-gi|9626243|ref|NC_001416.1|	1079	1	input1
-gi|9626243|ref|NC_001416.1|	1540	1	input1
-gi|9626243|ref|NC_001416.1|	1620	1	input4
-gi|9626243|ref|NC_001416.1|	1650	1	input4
-gi|9626243|ref|NC_001416.1|	1788	1	input4
-gi|9626243|ref|NC_001416.1|	1804	1	input1
-gi|9626243|ref|NC_001416.1|	2123	1	input1
-gi|9626243|ref|NC_001416.1|	2439	1	input3
-gi|9626243|ref|NC_001416.1|	2452	1	input4
-gi|9626243|ref|NC_001416.1|	2599	1	input2
-gi|9626243|ref|NC_001416.1|	3063	1	input4
-gi|9626243|ref|NC_001416.1|	3351	1	input1
-gi|9626243|ref|NC_001416.1|	3648	1	input3
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-gi|9626243|ref|NC_001416.1|	3678	1	input2
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output2.tabular	Fri Oct 13 15:37:28 2023 +0000
@@ -0,0 +1,165 @@
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