Mercurial > repos > greg > cfsan_snp_pipeline_merge_sites

changeset 2:b64c03573271 draft

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Uploaded
author greg
date Wed, 22 Nov 2023 17:59:10 +0000
parents 1013b32b325a
children bb483baa0e50
files cfsan_snp_pipeline_merge_sites.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/cfsan_snp_pipeline_merge_sites.xml	Fri Oct 13 15:37:28 2023 +0000
+++ b/cfsan_snp_pipeline_merge_sites.xml	Wed Nov 22 17:59:10 2023 +0000
@@ -7,10 +7,10 @@
     <command detect_errors="exit_code"><![CDATA[
 python '$__tool_directory__/snp_wind.py' ./
 #if str($input_type_cond.input_type) == 'single':
-    -n '$input_vcf.element_identifier'
-    -f '$input_vcf'
+    -n '$input_type_cond.input_vcf.element_identifier'
+    -f '$input_type_cond.input_vcf'
 #else:
-    #for $input_vcf in $input_vcf_collection
+    #for $input_vcf in $input_type_cond.input_vcf_collection:
         -n '$input_vcf.element_identifier'
         -f '$input_vcf'
     #end for