Mercurial > repos > greg > cfsan_snp_pipeline_snp_matrix
diff .shed.yml @ 0:6b0a13deae92 draft
Uploaded
| author | greg |
|---|---|
| date | Fri, 13 Oct 2023 20:26:32 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/.shed.yml Fri Oct 13 20:26:32 2023 +0000 @@ -0,0 +1,15 @@ +name: cfsan_snp_pipeline_snp_matrix +owner: greg +description: Create the SNP matrix containing the consensus base for each of the samples at + the positions where high-confidence SNPs were found in any of the samples. +long_description: Create the SNP matrix containing the consensus base for each of the samples at + the positions where high-confidence SNPs were found in any of the samples. The + matrix contains one row per sample and one column per SNP position. Non-SNP + positions are not included in the matrix. The matrix is formatted as a fasta + file, with each sequence (all of identical length) corresponding to the SNPs + in the correspondingly named sequence. +categories: +- Metagenomics +remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/snp_pipeline/cfsan_snp_pipeline_snp_matrix +homepage_url: https://github.com/gregvonkuster/galaxy_tools +type: unrestricted