Mercurial > repos > greg > cfsan_snp_pipeline_snp_matrix
annotate .shed.yml @ 0:6b0a13deae92 draft
Uploaded
| author | greg |
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| date | Fri, 13 Oct 2023 20:26:32 +0000 |
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| rev | line source |
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| 0 | 1 name: cfsan_snp_pipeline_snp_matrix |
| 2 owner: greg | |
| 3 description: Create the SNP matrix containing the consensus base for each of the samples at | |
| 4 the positions where high-confidence SNPs were found in any of the samples. | |
| 5 long_description: Create the SNP matrix containing the consensus base for each of the samples at | |
| 6 the positions where high-confidence SNPs were found in any of the samples. The | |
| 7 matrix contains one row per sample and one column per SNP position. Non-SNP | |
| 8 positions are not included in the matrix. The matrix is formatted as a fasta | |
| 9 file, with each sequence (all of identical length) corresponding to the SNPs | |
| 10 in the correspondingly named sequence. | |
| 11 categories: | |
| 12 - Metagenomics | |
| 13 remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/snp_pipeline/cfsan_snp_pipeline_snp_matrix | |
| 14 homepage_url: https://github.com/gregvonkuster/galaxy_tools | |
| 15 type: unrestricted |