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comparison test-data/amr_mutation_regions.bed @ 11:da1c9c1be421 draft

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author greg
date Mon, 27 Mar 2023 19:41:30 +0000
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10:03240ffe969a 11:da1c9c1be421
1 #contig start stop name type drug note
2 chromosome 6843 6862 gyrA QRDR snp quinolone gyrA QRDR mutation is the most common quinolone resistance mutation. It has not been observed in naturally occuring isolates.
3 chromosome 5664 6166 gyrB QRDR snp quinolone gyrB QRDR mutation is less a less common quinolone resistance mutation. It has not been observed in naturally occuring isolates.
4 chromosome 124092 124443 rplV any macrolide rplV alteration has been associated with macrolide resistance.
5 chromosome 3365449 3365459 parC QRDR 1 snp quinolone parC QRDR mutation is less a less common quinolone resistance mutation. It has not been observed in naturally occuring isolates.
6 chromosome 3365231 3365648 parC QRDR 2 snp quinolone parC QRDR mutation is less a less common quinolone resistance mutation. It has not been observed in naturally occuring isolates.
7 chromosome 3366159 3366605 parE QRDR snp quinolone parE QRDR mutation is less a less common quinolone resistance mutation. It has not been observed in naturally occuring isolates.
8 chromosome 842403 842981 tetR any quinolone terR inactivation has been shown to confer quinolone resistance in a lab setting. It has not been observed in natually ocurring isolates.
9 chromosome 2323274 2323294 rsip poly-A any beta-lactam rsiP inactivation has been shown to confer penicillin resistance in a lab setting. It has not been observed in naturally ocurring isolates.
10 chromosome 2323269 2324096 rsip broad-gene any beta-lactam rsiP inactivation has been shown to confer penicillin resistance in a lab setting. It has not been observed in naturally ocurring isolates.
11 chromosome 2421872 2421877 abc-f poly-A indel lincosamide Restoration of the abc-f ORF has been associated with lincosamide resistance in a lab setting. It has not been observed in naturally ocurring isolates.
12 chromosome 9307 10861 16S.1 point NA NA
13 chromosome 11230 14158 23S.1 point NA NA
14 chromosome 14203 14318 5S.1 point NA NA
15 chromosome 29101 30655 16S.2 point NA NA
16 chromosome 31024 33952 23S.2 point NA NA
17 chromosome 33997 34112 5S.2 point NA NA
18 chromosome 82423 83977 16S.3 point NA NA
19 chromosome 84119 87047 23S.3 point NA NA
20 chromosome 87093 87208 5S.3 point NA NA
21 chromosome 145487 147041 16S.4 point NA NA
22 chromosome 147183 150111 23S.4 point NA NA
23 chromosome 150194 150309 5S.4 point NA NA
24 chromosome 246207 247761 16S.5 point NA NA
25 chromosome 247903 250831 23S.5 point NA NA
26 chromosome 250877 250992 5S.5 point NA NA
27 chromosome 266786 268340 16S.6 point NA NA
28 chromosome 268482 271410 23S.6 point NA NA
29 chromosome 271456 271571 5S.6 point NA NA
30 chromosome 280084 281638 16S.7 point NA NA
31 chromosome 281780 284708 23S.7 point NA NA
32 chromosome 284755 284870 5S.7 point NA NA
33 chromosome 290057 291611 16S.8 point NA NA
34 chromosome 291753 294681 23S.8 point NA NA
35 chromosome 294728 294843 5S.8 point NA NA
36 chromosome 532435 533988 16S.9 point NA NA
37 chromosome 534123 537051 23S.9 point NA NA
38 chromosome 537148 537263 5S.9 point NA NA
39 chromosome 741537 743091 16S.10 point NA NA
40 chromosome 743233 746161 23S.10 point NA NA
41 chromosome 746259 746374 5S.10 point NA NA
42 chromosome 4652034 4652149 5S.11 point NA NA
43 chromosome 4652247 4655175 23S.11 point NA NA
44 chromosome 4655317 4656870 16S.11 point NA NA