Mercurial > repos > greg > insect_phenology_model
changeset 40:d8e6304dc5e4 draft
Uploaded
| author | greg |
|---|---|
| date | Wed, 11 Apr 2018 13:05:44 -0400 |
| parents | 169c8180205a |
| children | f4d683709b7f |
| files | insect_phenology_model.R insect_phenology_model.xml test-data/30_year_normals.csv test-data/state_college.csv test-data/state_college_partial.csv test-data/state_college_ytd.csv |
| diffstat | 6 files changed, 660 insertions(+), 189 deletions(-) [+] |
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--- a/insect_phenology_model.R Wed Apr 11 11:26:53 2018 -0400 +++ b/insect_phenology_model.R Wed Apr 11 13:05:44 2018 -0400 @@ -225,7 +225,7 @@ return(length(ticks)+1); } last_saved_tick = ticks[[length(ticks)]]; - if (index-last_saved_tick<6) { + if (index-last_saved_tick<3) { last_saved_month = month_labels[[length(month_labels)]]; if (last_saved_month=="") { # We're safe overwriting a tick
--- a/insect_phenology_model.xml Wed Apr 11 11:26:53 2018 -0400 +++ b/insect_phenology_model.xml Wed Apr 11 13:05:44 2018 -0400 @@ -133,7 +133,8 @@ </outputs> <tests> <test> - <param name="input_ytd" value="state_college.csv" ftype="csv" /> + <param name="input_ytd" value="state_college_partial.csv" ftype="csv" /> + <param name="input_norm" value="30_year_normals.csv" ftype="csv" /> <param name="location" value="State College PA" /> <param name="replications" value="2" /> <param name="plot_generations_separately" value="no" /> @@ -149,7 +150,8 @@ </output_collection> </test> <test> - <param name="input_ytd" value="state_college.csv" ftype="csv" /> + <param name="input_ytd" value="state_college_ytd.csv" ftype="csv" /> + <param name="input_norm" value="30_year_normals.csv" ftype="csv" /> <param name="location" value="State College PA" /> <param name="replications" value="2" /> <param name="plot_generations_separately" value="no" /> @@ -164,7 +166,8 @@ </output_collection> </test> <test> - <param name="input_ytd" value="state_college.csv" ftype="csv" /> + <param name="input_ytd" value="state_college_partial.csv" ftype="csv" /> + <param name="input_norm" value="30_year_normals.csv" ftype="csv" /> <param name="location" value="State College PA" /> <param name="replications" value="2" /> <param name="plot_egg_life_stage" value="no" /> @@ -181,7 +184,8 @@ </output_collection> </test> <test> - <param name="input_ytd" value="state_college.csv" ftype="csv" /> + <param name="input_ytd" value="state_college_ytd.csv" ftype="csv" /> + <param name="input_norm" value="30_year_normals.csv" ftype="csv" /> <param name="location" value="State College PA" /> <param name="replications" value="2" /> <output_collection name="output_data_collection" type="list">
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/30_year_normals.csv Wed Apr 11 13:05:44 2018 -0400 @@ -0,0 +1,367 @@ +stationid,latitude,longitude,elev_m,name,st,mmdd,doy,tmin,tmax +USC00360785,40.3844,-76.0339,106.7,BLUE MARSH LAKE,PA,01-01, 001,-6.8,2.8 +USC00360785,40.3844,-76.0339,106.7,BLUE MARSH LAKE,PA,01-02, 002,-6.8,2.7 +USC00360785,40.3844,-76.0339,106.7,BLUE MARSH LAKE,PA,01-03, 003,-6.9,2.6 +USC00360785,40.3844,-76.0339,106.7,BLUE MARSH LAKE,PA,01-04, 004,-7.0,2.6 +USC00360785,40.3844,-76.0339,106.7,BLUE MARSH LAKE,PA,01-05, 005,-7.1,2.5 +USC00360785,40.3844,-76.0339,106.7,BLUE MARSH LAKE,PA,01-06, 006,-7.1,2.5 +USC00360785,40.3844,-76.0339,106.7,BLUE MARSH LAKE,PA,01-07, 007,-7.2,2.4 +USC00360785,40.3844,-76.0339,106.7,BLUE MARSH LAKE,PA,01-08, 008,-7.2,2.4 +USC00360785,40.3844,-76.0339,106.7,BLUE MARSH LAKE,PA,01-09, 009,-7.3,2.4 +USC00360785,40.3844,-76.0339,106.7,BLUE MARSH LAKE,PA,01-10, 010,-7.3,2.3 +USC00360785,40.3844,-76.0339,106.7,BLUE MARSH 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--- a/test-data/state_college.csv Wed Apr 11 11:26:53 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,184 +0,0 @@ -LATITUDE,LONGITUDE,DATE,DOY,TMIN,TMAX - 40.81849,-77.84637,2017-04-01,091,3.30,7.66 - 40.81849,-77.84637,2017-04-02,092,1.69,15.19 - 40.81849,-77.84637,2017-04-03,093,3.48,18.81 - 40.81849,-77.84637,2017-04-04,094,9.28,18.75 - 40.81849,-77.84637,2017-04-05,095,8.14,19.01 - 40.81849,-77.84637,2017-04-06,096,4.59,12.02 - 40.81849,-77.84637,2017-04-07,097,1.19,3.66 - 40.81849,-77.84637,2017-04-08,098,-0.56,13.85 - 40.81849,-77.84637,2017-04-09,099,-2.32,21.96 - 40.81849,-77.84637,2017-04-10,100,7.90,26.25 - 40.81849,-77.84637,2017-04-11,101,9.25,26.48 - 40.81849,-77.84637,2017-04-12,102,8.95,19.78 - 40.81849,-77.84637,2017-04-13,103,4.00,15.47 - 40.81849,-77.84637,2017-04-14,104,5.09,20.10 - 40.81849,-77.84637,2017-04-15,105,8.44,25.02 - 40.81849,-77.84637,2017-04-16,106,14.13,26.54 - 40.81849,-77.84637,2017-04-17,107,8.23,20.59 - 40.81849,-77.84637,2017-04-18,108,3.27,20.96 - 40.81849,-77.84637,2017-04-19,109,9.76,13.40 - 40.81849,-77.84637,2017-04-20,110,10.70,25.45 - 40.81849,-77.84637,2017-04-21,111,11.74,22.34 - 40.81849,-77.84637,2017-04-22,112,4.90,13.43 - 40.81849,-77.84637,2017-04-23,113,0.43,20.16 - 40.81849,-77.84637,2017-04-24,114,1.21,17.18 - 40.81849,-77.84637,2017-04-25,115,9.93,14.30 - 40.81849,-77.84637,2017-04-26,116,11.38,23.36 - 40.81849,-77.84637,2017-04-27,117,12.42,23.94 - 40.81849,-77.84637,2017-04-28,118,11.79,25.11 - 40.81849,-77.84637,2017-04-29,119,11.14,24.38 - 40.81849,-77.84637,2017-04-30,120,12.08,25.29 - 40.81849,-77.84637,2017-05-01,121,13.37,25.43 - 40.81849,-77.84637,2017-05-02,122,10.78,15.74 - 40.81849,-77.84637,2017-05-03,123,5.09,16.41 - 40.81849,-77.84637,2017-05-04,124,4.07,14.99 - 40.81849,-77.84637,2017-05-05,125,8.04,17.02 - 40.81849,-77.84637,2017-05-06,126,5.92,12.78 - 40.81849,-77.84637,2017-05-07,127,2.90,12.05 - 40.81849,-77.84637,2017-05-08,128,1.22,13.07 - 40.81849,-77.84637,2017-05-09,129,-1.45,17.87 - 40.81849,-77.84637,2017-05-10,130,5.94,19.31 - 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40.81849,-77.84637,2017-09-16,259,14.73,25.42 - 40.81849,-77.84637,2017-09-17,260,14.85,27.42 - 40.81849,-77.84637,2017-09-18,261,16.12,26.18 - 40.81849,-77.84637,2017-09-19,262,13.36,25.46 - 40.81849,-77.84637,2017-09-20,263,10.90,28.76 - 40.81849,-77.84637,2017-09-21,264,11.68,28.44 - 40.81849,-77.84637,2017-09-22,265,13.10,29.03 - 40.81849,-77.84637,2017-09-23,266,10.11,30.51 - 40.81849,-77.84637,2017-09-24,267,12.33,31.11 - 40.81849,-77.84637,2017-09-25,268,15.03,31.81 - 40.81849,-77.84637,2017-09-26,269,16.01,30.96 - 40.81849,-77.84637,2017-09-27,270,15.03,31.27 - 40.81849,-77.84637,2017-09-28,271,9.61,21.39 - 40.81849,-77.84637,2017-09-29,272,6.03,20.71 - 40.81849,-77.84637,2017-09-30,273,2.85,15.23
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/state_college_partial.csv Wed Apr 11 13:05:44 2018 -0400 @@ -0,0 +1,184 @@ +LATITUDE,LONGITUDE,DATE,DOY,TMIN,TMAX + 40.81849,-77.84637,2017-04-01,091,3.30,7.66 + 40.81849,-77.84637,2017-04-02,092,1.69,15.19 + 40.81849,-77.84637,2017-04-03,093,3.48,18.81 + 40.81849,-77.84637,2017-04-04,094,9.28,18.75 + 40.81849,-77.84637,2017-04-05,095,8.14,19.01 + 40.81849,-77.84637,2017-04-06,096,4.59,12.02 + 40.81849,-77.84637,2017-04-07,097,1.19,3.66 + 40.81849,-77.84637,2017-04-08,098,-0.56,13.85 + 40.81849,-77.84637,2017-04-09,099,-2.32,21.96 + 40.81849,-77.84637,2017-04-10,100,7.90,26.25 + 40.81849,-77.84637,2017-04-11,101,9.25,26.48 + 40.81849,-77.84637,2017-04-12,102,8.95,19.78 + 40.81849,-77.84637,2017-04-13,103,4.00,15.47 + 40.81849,-77.84637,2017-04-14,104,5.09,20.10 + 40.81849,-77.84637,2017-04-15,105,8.44,25.02 + 40.81849,-77.84637,2017-04-16,106,14.13,26.54 + 40.81849,-77.84637,2017-04-17,107,8.23,20.59 + 40.81849,-77.84637,2017-04-18,108,3.27,20.96 + 40.81849,-77.84637,2017-04-19,109,9.76,13.40 + 40.81849,-77.84637,2017-04-20,110,10.70,25.45 + 40.81849,-77.84637,2017-04-21,111,11.74,22.34 + 40.81849,-77.84637,2017-04-22,112,4.90,13.43 + 40.81849,-77.84637,2017-04-23,113,0.43,20.16 + 40.81849,-77.84637,2017-04-24,114,1.21,17.18 + 40.81849,-77.84637,2017-04-25,115,9.93,14.30 + 40.81849,-77.84637,2017-04-26,116,11.38,23.36 + 40.81849,-77.84637,2017-04-27,117,12.42,23.94 + 40.81849,-77.84637,2017-04-28,118,11.79,25.11 + 40.81849,-77.84637,2017-04-29,119,11.14,24.38 + 40.81849,-77.84637,2017-04-30,120,12.08,25.29 + 40.81849,-77.84637,2017-05-01,121,13.37,25.43 + 40.81849,-77.84637,2017-05-02,122,10.78,15.74 + 40.81849,-77.84637,2017-05-03,123,5.09,16.41 + 40.81849,-77.84637,2017-05-04,124,4.07,14.99 + 40.81849,-77.84637,2017-05-05,125,8.04,17.02 + 40.81849,-77.84637,2017-05-06,126,5.92,12.78 + 40.81849,-77.84637,2017-05-07,127,2.90,12.05 + 40.81849,-77.84637,2017-05-08,128,1.22,13.07 + 40.81849,-77.84637,2017-05-09,129,-1.45,17.87 + 40.81849,-77.84637,2017-05-10,130,5.94,19.31 + 40.81849,-77.84637,2017-05-11,131,7.90,11.11 + 40.81849,-77.84637,2017-05-12,132,8.75,12.95 + 40.81849,-77.84637,2017-05-13,133,5.68,14.39 + 40.81849,-77.84637,2017-05-14,134,5.94,19.81 + 40.81849,-77.84637,2017-05-15,135,7.37,22.14 + 40.81849,-77.84637,2017-05-16,136,5.18,26.96 + 40.81849,-77.84637,2017-05-17,137,11.12,31.63 + 40.81849,-77.84637,2017-05-18,138,15.39,32.05 + 40.81849,-77.84637,2017-05-19,139,13.92,29.51 + 40.81849,-77.84637,2017-05-20,140,9.38,13.55 + 40.81849,-77.84637,2017-05-21,141,12.60,17.19 + 40.81849,-77.84637,2017-05-22,142,10.93,23.45 + 40.81849,-77.84637,2017-05-23,143,6.24,21.30 + 40.81849,-77.84637,2017-05-24,144,10.97,21.61 + 40.81849,-77.84637,2017-05-25,145,11.91,18.55 + 40.81849,-77.84637,2017-05-26,146,13.00,19.09 + 40.81849,-77.84637,2017-05-27,147,9.28,22.35 + 40.81849,-77.84637,2017-05-28,148,13.02,19.25 + 40.81849,-77.84637,2017-05-29,149,15.61,25.52 + 40.81849,-77.84637,2017-05-30,150,14.89,20.32 + 40.81849,-77.84637,2017-05-31,151,12.29,24.32 + 40.81849,-77.84637,2017-06-01,152,9.02,22.91 + 40.81849,-77.84637,2017-06-02,153,10.83,22.70 + 40.81849,-77.84637,2017-06-03,154,10.01,25.36 + 40.81849,-77.84637,2017-06-04,155,8.05,16.85 + 40.81849,-77.84637,2017-06-05,156,14.04,23.52 + 40.81849,-77.84637,2017-06-06,157,13.20,21.63 + 40.81849,-77.84637,2017-06-07,158,9.99,17.12 + 40.81849,-77.84637,2017-06-08,159,9.42,23.51 + 40.81849,-77.84637,2017-06-09,160,10.71,25.54 + 40.81849,-77.84637,2017-06-10,161,15.90,29.01 + 40.81849,-77.84637,2017-06-11,162,15.11,31.46 + 40.81849,-77.84637,2017-06-12,163,15.59,31.82 + 40.81849,-77.84637,2017-06-13,164,18.19,34.21 + 40.81849,-77.84637,2017-06-14,165,19.55,29.87 + 40.81849,-77.84637,2017-06-15,166,17.02,27.22 + 40.81849,-77.84637,2017-06-16,167,17.59,26.76 + 40.81849,-77.84637,2017-06-17,168,17.43,29.03 + 40.81849,-77.84637,2017-06-18,169,20.91,31.44 + 40.81849,-77.84637,2017-06-19,170,17.51,24.38 + 40.81849,-77.84637,2017-06-20,171,14.80,25.74 + 40.81849,-77.84637,2017-06-21,172,13.97,26.99 + 40.81849,-77.84637,2017-06-22,173,12.72,29.78 + 40.81849,-77.84637,2017-06-23,174,19.03,25.44 + 40.81849,-77.84637,2017-06-24,175,15.76,27.33 + 40.81849,-77.84637,2017-06-25,176,12.89,24.84 + 40.81849,-77.84637,2017-06-26,177,9.91,23.03 + 40.81849,-77.84637,2017-06-27,178,10.84,20.57 + 40.81849,-77.84637,2017-06-28,179,8.10,25.23 + 40.81849,-77.84637,2017-06-29,180,14.48,29.26 + 40.81849,-77.84637,2017-06-30,181,19.94,30.59 + 40.81849,-77.84637,2017-07-01,182,20.79,29.10 + 40.81849,-77.84637,2017-07-02,183,17.01,29.60 + 40.81849,-77.84637,2017-07-03,184,17.01,29.60 + 40.81849,-77.84637,2017-07-04,185,20.43,23.44 + 40.81849,-77.84637,2017-07-05,186,20.43,23.44 + 40.81849,-77.84637,2017-07-06,187,19.56,22.32 + 40.81849,-77.84637,2017-07-07,188,19.35,28.04 + 40.81849,-77.84637,2017-07-08,189,15.93,25.53 + 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+ 40.81849,-77.84637,2017-09-29,272,6.03,20.71 + 40.81849,-77.84637,2017-09-30,273,2.85,15.23
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