Mercurial > repos > greg > mummer4_dnadiff

comparison test-data/report.txt @ 0:491b007eec5d draft default tip

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author greg
date Mon, 27 Feb 2023 20:02:43 +0000
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-1:000000000000 0:491b007eec5d
1 /tmp/tmpm1aw7z9b/files/6/1/9/dataset_619c747c-cdb5-4d85-adda-e0ec5f7fa2fe.dat /tmp/tmpm1aw7z9b/files/f/e/c/dataset_fec4ecfe-55bb-4ff9-86e1-292952d00dd1.dat
2 NUCMER
3
4 [REF] [QRY]
5 [Sequences]
6 TotalSeqs 1 1
7 AlignedSeqs 1(100.0000%) 1(100.0000%)
8 UnalignedSeqs 0(0.0000%) 0(0.0000%)
9
10 [Bases]
11 TotalBases 6480 5460
12 AlignedBases 670(10.3395%) 663(12.1429%)
13 UnalignedBases 5810(89.6605%) 4797(87.8571%)
14
15 [Alignments]
16 1-to-1 2 2
17 TotalLength 670 663
18 AvgLength 335.0000 331.5000
19 AvgIdentity 86.4791 86.4791
20
21 M-to-M 2 2
22 TotalLength 670 663
23 AvgLength 335.0000 331.5000
24 AvgIdentity 86.4791 86.4791
25
26 [Feature Estimates]
27 Breakpoints 4 4
28 Relocations 0 0
29 Translocations 0 0
30 Inversions 0 0
31
32 Insertions 3 3
33 InsertionSum 5810 4797
34 InsertionAvg 1936.6667 1599.0000
35
36 TandemIns 0 0
37 TandemInsSum 0 0
38 TandemInsAvg 0.0000 0.0000
39
40 [SNPs]
41 TotalSNPs 78 78
42 TG 2(2.5641%) 5(6.4103%)
43 TC 9(11.5385%) 28(35.8974%)
44 TA 2(2.5641%) 2(2.5641%)
45 GC 6(7.6923%) 6(7.6923%)
46 GA 5(6.4103%) 2(2.5641%)
47 GT 5(6.4103%) 2(2.5641%)
48 CT 28(35.8974%) 9(11.5385%)
49 CA 5(6.4103%) 6(7.6923%)
50 CG 6(7.6923%) 6(7.6923%)
51 AT 2(2.5641%) 2(2.5641%)
52 AG 2(2.5641%) 5(6.4103%)
53 AC 6(7.6923%) 5(6.4103%)
54
55 TotalGSNPs 1 1
56 TA 0(0.0000%) 0(0.0000%)
57 TG 0(0.0000%) 0(0.0000%)
58 TC 0(0.0000%) 0(0.0000%)
59 AG 0(0.0000%) 0(0.0000%)
60 AC 1(100.0000%) 0(0.0000%)
61 AT 0(0.0000%) 0(0.0000%)
62 GC 0(0.0000%) 0(0.0000%)
63 GA 0(0.0000%) 0(0.0000%)
64 GT 0(0.0000%) 0(0.0000%)
65 CT 0(0.0000%) 0(0.0000%)
66 CG 0(0.0000%) 0(0.0000%)
67 CA 0(0.0000%) 1(100.0000%)
68
69 TotalIndels 13 13
70 T. 0(0.0000%) 2(15.3846%)
71 G. 2(15.3846%) 1(7.6923%)
72 C. 5(38.4615%) 0(0.0000%)
73 A. 3(23.0769%) 0(0.0000%)
74 .G 1(7.6923%) 2(15.3846%)
75 .C 0(0.0000%) 5(38.4615%)
76 .A 0(0.0000%) 3(23.0769%)
77 .T 2(15.3846%) 0(0.0000%)
78
79 TotalGIndels 0 0
80 T. 0(0.0000%) 0(0.0000%)
81 A. 0(0.0000%) 0(0.0000%)
82 G. 0(0.0000%) 0(0.0000%)
83 C. 0(0.0000%) 0(0.0000%)
84 .A 0(0.0000%) 0(0.0000%)
85 .C 0(0.0000%) 0(0.0000%)
86 .G 0(0.0000%) 0(0.0000%)
87 .T 0(0.0000%) 0(0.0000%)