Mercurial > repos > greg > mummer4_dnadiff
view test-data/report.txt @ 0:491b007eec5d draft default tip
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| author | greg |
|---|---|
| date | Mon, 27 Feb 2023 20:02:43 +0000 |
| parents | |
| children |
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/tmp/tmpm1aw7z9b/files/6/1/9/dataset_619c747c-cdb5-4d85-adda-e0ec5f7fa2fe.dat /tmp/tmpm1aw7z9b/files/f/e/c/dataset_fec4ecfe-55bb-4ff9-86e1-292952d00dd1.dat NUCMER [REF] [QRY] [Sequences] TotalSeqs 1 1 AlignedSeqs 1(100.0000%) 1(100.0000%) UnalignedSeqs 0(0.0000%) 0(0.0000%) [Bases] TotalBases 6480 5460 AlignedBases 670(10.3395%) 663(12.1429%) UnalignedBases 5810(89.6605%) 4797(87.8571%) [Alignments] 1-to-1 2 2 TotalLength 670 663 AvgLength 335.0000 331.5000 AvgIdentity 86.4791 86.4791 M-to-M 2 2 TotalLength 670 663 AvgLength 335.0000 331.5000 AvgIdentity 86.4791 86.4791 [Feature Estimates] Breakpoints 4 4 Relocations 0 0 Translocations 0 0 Inversions 0 0 Insertions 3 3 InsertionSum 5810 4797 InsertionAvg 1936.6667 1599.0000 TandemIns 0 0 TandemInsSum 0 0 TandemInsAvg 0.0000 0.0000 [SNPs] TotalSNPs 78 78 TG 2(2.5641%) 5(6.4103%) TC 9(11.5385%) 28(35.8974%) TA 2(2.5641%) 2(2.5641%) GC 6(7.6923%) 6(7.6923%) GA 5(6.4103%) 2(2.5641%) GT 5(6.4103%) 2(2.5641%) CT 28(35.8974%) 9(11.5385%) CA 5(6.4103%) 6(7.6923%) CG 6(7.6923%) 6(7.6923%) AT 2(2.5641%) 2(2.5641%) AG 2(2.5641%) 5(6.4103%) AC 6(7.6923%) 5(6.4103%) TotalGSNPs 1 1 TA 0(0.0000%) 0(0.0000%) TG 0(0.0000%) 0(0.0000%) TC 0(0.0000%) 0(0.0000%) AG 0(0.0000%) 0(0.0000%) AC 1(100.0000%) 0(0.0000%) AT 0(0.0000%) 0(0.0000%) GC 0(0.0000%) 0(0.0000%) GA 0(0.0000%) 0(0.0000%) GT 0(0.0000%) 0(0.0000%) CT 0(0.0000%) 0(0.0000%) CG 0(0.0000%) 0(0.0000%) CA 0(0.0000%) 1(100.0000%) TotalIndels 13 13 T. 0(0.0000%) 2(15.3846%) G. 2(15.3846%) 1(7.6923%) C. 5(38.4615%) 0(0.0000%) A. 3(23.0769%) 0(0.0000%) .G 1(7.6923%) 2(15.3846%) .C 0(0.0000%) 5(38.4615%) .A 0(0.0000%) 3(23.0769%) .T 2(15.3846%) 0(0.0000%) TotalGIndels 0 0 T. 0(0.0000%) 0(0.0000%) A. 0(0.0000%) 0(0.0000%) G. 0(0.0000%) 0(0.0000%) C. 0(0.0000%) 0(0.0000%) .A 0(0.0000%) 0(0.0000%) .C 0(0.0000%) 0(0.0000%) .G 0(0.0000%) 0(0.0000%) .T 0(0.0000%) 0(0.0000%)