Mercurial > repos > greg > mummer4_dnadiff
comparison test-data/report.txt @ 0:491b007eec5d draft default tip
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author | greg |
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date | Mon, 27 Feb 2023 20:02:43 +0000 (22 months ago) |
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-1:000000000000 | 0:491b007eec5d |
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1 /tmp/tmpm1aw7z9b/files/6/1/9/dataset_619c747c-cdb5-4d85-adda-e0ec5f7fa2fe.dat /tmp/tmpm1aw7z9b/files/f/e/c/dataset_fec4ecfe-55bb-4ff9-86e1-292952d00dd1.dat | |
2 NUCMER | |
3 | |
4 [REF] [QRY] | |
5 [Sequences] | |
6 TotalSeqs 1 1 | |
7 AlignedSeqs 1(100.0000%) 1(100.0000%) | |
8 UnalignedSeqs 0(0.0000%) 0(0.0000%) | |
9 | |
10 [Bases] | |
11 TotalBases 6480 5460 | |
12 AlignedBases 670(10.3395%) 663(12.1429%) | |
13 UnalignedBases 5810(89.6605%) 4797(87.8571%) | |
14 | |
15 [Alignments] | |
16 1-to-1 2 2 | |
17 TotalLength 670 663 | |
18 AvgLength 335.0000 331.5000 | |
19 AvgIdentity 86.4791 86.4791 | |
20 | |
21 M-to-M 2 2 | |
22 TotalLength 670 663 | |
23 AvgLength 335.0000 331.5000 | |
24 AvgIdentity 86.4791 86.4791 | |
25 | |
26 [Feature Estimates] | |
27 Breakpoints 4 4 | |
28 Relocations 0 0 | |
29 Translocations 0 0 | |
30 Inversions 0 0 | |
31 | |
32 Insertions 3 3 | |
33 InsertionSum 5810 4797 | |
34 InsertionAvg 1936.6667 1599.0000 | |
35 | |
36 TandemIns 0 0 | |
37 TandemInsSum 0 0 | |
38 TandemInsAvg 0.0000 0.0000 | |
39 | |
40 [SNPs] | |
41 TotalSNPs 78 78 | |
42 TG 2(2.5641%) 5(6.4103%) | |
43 TC 9(11.5385%) 28(35.8974%) | |
44 TA 2(2.5641%) 2(2.5641%) | |
45 GC 6(7.6923%) 6(7.6923%) | |
46 GA 5(6.4103%) 2(2.5641%) | |
47 GT 5(6.4103%) 2(2.5641%) | |
48 CT 28(35.8974%) 9(11.5385%) | |
49 CA 5(6.4103%) 6(7.6923%) | |
50 CG 6(7.6923%) 6(7.6923%) | |
51 AT 2(2.5641%) 2(2.5641%) | |
52 AG 2(2.5641%) 5(6.4103%) | |
53 AC 6(7.6923%) 5(6.4103%) | |
54 | |
55 TotalGSNPs 1 1 | |
56 TA 0(0.0000%) 0(0.0000%) | |
57 TG 0(0.0000%) 0(0.0000%) | |
58 TC 0(0.0000%) 0(0.0000%) | |
59 AG 0(0.0000%) 0(0.0000%) | |
60 AC 1(100.0000%) 0(0.0000%) | |
61 AT 0(0.0000%) 0(0.0000%) | |
62 GC 0(0.0000%) 0(0.0000%) | |
63 GA 0(0.0000%) 0(0.0000%) | |
64 GT 0(0.0000%) 0(0.0000%) | |
65 CT 0(0.0000%) 0(0.0000%) | |
66 CG 0(0.0000%) 0(0.0000%) | |
67 CA 0(0.0000%) 1(100.0000%) | |
68 | |
69 TotalIndels 13 13 | |
70 T. 0(0.0000%) 2(15.3846%) | |
71 G. 2(15.3846%) 1(7.6923%) | |
72 C. 5(38.4615%) 0(0.0000%) | |
73 A. 3(23.0769%) 0(0.0000%) | |
74 .G 1(7.6923%) 2(15.3846%) | |
75 .C 0(0.0000%) 5(38.4615%) | |
76 .A 0(0.0000%) 3(23.0769%) | |
77 .T 2(15.3846%) 0(0.0000%) | |
78 | |
79 TotalGIndels 0 0 | |
80 T. 0(0.0000%) 0(0.0000%) | |
81 A. 0(0.0000%) 0(0.0000%) | |
82 G. 0(0.0000%) 0(0.0000%) | |
83 C. 0(0.0000%) 0(0.0000%) | |
84 .A 0(0.0000%) 0(0.0000%) | |
85 .C 0(0.0000%) 0(0.0000%) | |
86 .G 0(0.0000%) 0(0.0000%) | |
87 .T 0(0.0000%) 0(0.0000%) |