Mercurial > repos > greg > pima_report

changeset 19:c509e6819795 draft

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Uploaded
author greg
date Thu, 30 Mar 2023 20:35:32 +0000
parents e948214a9e3c
children 4fe8c35cd176
files pima_report.py
diffstat 1 files changed, 1 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/pima_report.py	Wed Mar 22 13:07:22 2023 +0000
+++ b/pima_report.py	Thu Mar 30 20:35:32 2023 +0000
@@ -528,6 +528,7 @@
             for circos_file in self.circos_files:
                 contig = os.path.basename(circos_file)
                 contig_title = 'Alignment to %s' % contig
+                self.doc.new_line('Blue indicates aligned sequences (to the reference) and yellow indicates missing sequences')
                 self.doc.new_line()
                 self.doc.new_header(level=3, title=contig_title)
                 self.doc.new_line(self.doc.new_inline_image(text='contig_title', path=os.path.abspath(circos_file)))