Mercurial > repos > greg > plant_tribes_kaks_analysis

changeset 1:3aca88613abf draft

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Uploaded
author greg
date Wed, 28 Jun 2017 11:17:25 -0400
parents 2f0b8e19286b
children 2fe7044626ac
files kaks_analysis.xml macros.xml
diffstat 2 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/kaks_analysis.xml	Thu Jun 08 12:53:38 2017 -0400
+++ b/kaks_analysis.xml	Wed Jun 28 11:17:25 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="plant_tribes_kaks_analysis" name="KaKsAnalysis" version="@WRAPPER_VERSION@.0">
+<tool id="plant_tribes_kaks_analysis" name="KaKsAnalysis" version="@WRAPPER_VERSION@.1">
     <description>estimates paralogous and orthologous pairwise synonymous (Ks) and non-synonymous (Ka) substitution rates</description>
     <macros>
         <import>macros.xml</import>
@@ -183,7 +183,7 @@
         </data>
         <data name="output_rbhb" format="tabular" label="${tool.name} (paralogous pairs) on ${on_string}" />
         <data name="output_kaks" format="tabular" label="${tool.name} on ${on_string}" />
-        <data name="output_components" format="tabular" label="${tool.name} (significant components in the ks distribution) on ${on_string}">
+        <data name="output_components" format="ptkscmp" label="${tool.name} (significant components in the ks distribution) on ${on_string}">
             <filter>options_type['options_type_selector'] == 'advanced' and options_type['fit_components_cond']['fit_components'] == 'yes'</filter>
         </data>
     </outputs>
@@ -191,7 +191,7 @@
         <test>
             <param name="coding_sequences_species_1" value="species1_cds.fasta" ftype="fasta"/>
             <param name="proteins_species_1" value="species1_pep.fasta" ftype="fasta"/>
-            <param name="non_commercial_use" value="yes"/>
+            <param name="non_commercial_use" value="True"/>
             <output name="output_species1_fna" file="species1_cds.fasta" ftype="fasta" compare="contains"/>
             <output name="output_species1_faa" file="species1_pep.fasta" ftype="fasta" compare="contains"/>
             <output name="output_species1_paralog" file="output_blastn_results1.tabular" ftype="tabular" compare="contains"/>
--- a/macros.xml	Thu Jun 08 12:53:38 2017 -0400
+++ b/macros.xml	Wed Jun 28 11:17:25 2017 -0400
@@ -3,7 +3,7 @@
     <token name="@WRAPPER_VERSION@">1.0</token>
     <xml name="requirements_assembly_post_processor">
         <requirements>
-            <requirement type="package" version="1.0.0">plant_tribes_assembly_post_processor</requirement>
+            <requirement type="package" version="1.0.1">plant_tribes_assembly_post_processor</requirement>
         </requirements>
     </xml>
     <xml name="requirements_gene_family_aligner">