annotate test-data/test5.tab @ 0:5367786dc871 draft default tip

Uploaded
author greg
date Tue, 14 Mar 2023 15:21:14 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
5367786dc871 Uploaded
greg
parents:
diff changeset
1 Assembly contig1 contig2
5367786dc871 Uploaded
greg
parents:
diff changeset
2 # contigs (>= 0 bp) 3 1
5367786dc871 Uploaded
greg
parents:
diff changeset
3 # contigs (>= 1000 bp) 3 1
5367786dc871 Uploaded
greg
parents:
diff changeset
4 Total length (>= 0 bp) 6710 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
5 Total length (>= 1000 bp) 6710 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
6 # contigs 3 1
5367786dc871 Uploaded
greg
parents:
diff changeset
7 Largest contig 3980 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
8 Total length 6710 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
9 Reference length 6650 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
10 GC (%) 51.28 52.00
5367786dc871 Uploaded
greg
parents:
diff changeset
11 Reference GC (%) 52.00 52.00
5367786dc871 Uploaded
greg
parents:
diff changeset
12 N50 3980 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
13 NG50 3980 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
14 N90 1120 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
15 NG90 1120 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
16 auN 2934.0 6650.0
5367786dc871 Uploaded
greg
parents:
diff changeset
17 auNG 2960.4 6650.0
5367786dc871 Uploaded
greg
parents:
diff changeset
18 L50 1 1
5367786dc871 Uploaded
greg
parents:
diff changeset
19 LG50 1 1
5367786dc871 Uploaded
greg
parents:
diff changeset
20 L90 3 1
5367786dc871 Uploaded
greg
parents:
diff changeset
21 LG90 3 1
5367786dc871 Uploaded
greg
parents:
diff changeset
22 # total reads 330 330
5367786dc871 Uploaded
greg
parents:
diff changeset
23 # left 0 0
5367786dc871 Uploaded
greg
parents:
diff changeset
24 # right 0 0
5367786dc871 Uploaded
greg
parents:
diff changeset
25 Mapped (%) 2.73 2.42
5367786dc871 Uploaded
greg
parents:
diff changeset
26 Reference mapped (%) 2.42 2.42
5367786dc871 Uploaded
greg
parents:
diff changeset
27 Properly paired (%) 0.0 0.0
5367786dc871 Uploaded
greg
parents:
diff changeset
28 Reference properly paired (%) 0.0 0.0
5367786dc871 Uploaded
greg
parents:
diff changeset
29 Avg. coverage depth 0 1
5367786dc871 Uploaded
greg
parents:
diff changeset
30 Reference avg. coverage depth 1 1
5367786dc871 Uploaded
greg
parents:
diff changeset
31 Coverage >= 1x (%) 42.22 48.17
5367786dc871 Uploaded
greg
parents:
diff changeset
32 Reference coverage >= 1x (%) 48.17 48.17
5367786dc871 Uploaded
greg
parents:
diff changeset
33 # misassemblies 0 0
5367786dc871 Uploaded
greg
parents:
diff changeset
34 # misassembled contigs 0 0
5367786dc871 Uploaded
greg
parents:
diff changeset
35 Misassembled contigs length 0 0
5367786dc871 Uploaded
greg
parents:
diff changeset
36 # local misassemblies 0 0
5367786dc871 Uploaded
greg
parents:
diff changeset
37 # scaffold gap ext. mis. 0 0
5367786dc871 Uploaded
greg
parents:
diff changeset
38 # scaffold gap loc. mis. 0 0
5367786dc871 Uploaded
greg
parents:
diff changeset
39 # unaligned mis. contigs 0 0
5367786dc871 Uploaded
greg
parents:
diff changeset
40 # unaligned contigs 0 + 1 part 0 + 0 part
5367786dc871 Uploaded
greg
parents:
diff changeset
41 Unaligned length 1950 0
5367786dc871 Uploaded
greg
parents:
diff changeset
42 Genome fraction (%) 71.579 100.000
5367786dc871 Uploaded
greg
parents:
diff changeset
43 Duplication ratio 1.000 1.000
5367786dc871 Uploaded
greg
parents:
diff changeset
44 # N's per 100 kbp 0.00 0.00
5367786dc871 Uploaded
greg
parents:
diff changeset
45 # mismatches per 100 kbp 0.00 0.00
5367786dc871 Uploaded
greg
parents:
diff changeset
46 # indels per 100 kbp 0.00 0.00
5367786dc871 Uploaded
greg
parents:
diff changeset
47 Largest alignment 2030 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
48 Total aligned length 4760 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
49 NA50 1610 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
50 NGA50 1610 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
51 NA90 - 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
52 NGA90 - 6650
5367786dc871 Uploaded
greg
parents:
diff changeset
53 auNA 1187.4 6650.0
5367786dc871 Uploaded
greg
parents:
diff changeset
54 auNGA 1198.1 6650.0
5367786dc871 Uploaded
greg
parents:
diff changeset
55 LA50 2 1
5367786dc871 Uploaded
greg
parents:
diff changeset
56 LGA50 2 1
5367786dc871 Uploaded
greg
parents:
diff changeset
57 LA90 - 1
5367786dc871 Uploaded
greg
parents:
diff changeset
58 LGA90 - 1