Mercurial > repos > greg > quast
diff test-data/test5.tab @ 0:5367786dc871 draft default tip
Uploaded
| author | greg |
|---|---|
| date | Tue, 14 Mar 2023 15:21:14 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test5.tab Tue Mar 14 15:21:14 2023 +0000 @@ -0,0 +1,58 @@ +Assembly contig1 contig2 +# contigs (>= 0 bp) 3 1 +# contigs (>= 1000 bp) 3 1 +Total length (>= 0 bp) 6710 6650 +Total length (>= 1000 bp) 6710 6650 +# contigs 3 1 +Largest contig 3980 6650 +Total length 6710 6650 +Reference length 6650 6650 +GC (%) 51.28 52.00 +Reference GC (%) 52.00 52.00 +N50 3980 6650 +NG50 3980 6650 +N90 1120 6650 +NG90 1120 6650 +auN 2934.0 6650.0 +auNG 2960.4 6650.0 +L50 1 1 +LG50 1 1 +L90 3 1 +LG90 3 1 +# total reads 330 330 +# left 0 0 +# right 0 0 +Mapped (%) 2.73 2.42 +Reference mapped (%) 2.42 2.42 +Properly paired (%) 0.0 0.0 +Reference properly paired (%) 0.0 0.0 +Avg. coverage depth 0 1 +Reference avg. coverage depth 1 1 +Coverage >= 1x (%) 42.22 48.17 +Reference coverage >= 1x (%) 48.17 48.17 +# misassemblies 0 0 +# misassembled contigs 0 0 +Misassembled contigs length 0 0 +# local misassemblies 0 0 +# scaffold gap ext. mis. 0 0 +# scaffold gap loc. mis. 0 0 +# unaligned mis. contigs 0 0 +# unaligned contigs 0 + 1 part 0 + 0 part +Unaligned length 1950 0 +Genome fraction (%) 71.579 100.000 +Duplication ratio 1.000 1.000 +# N's per 100 kbp 0.00 0.00 +# mismatches per 100 kbp 0.00 0.00 +# indels per 100 kbp 0.00 0.00 +Largest alignment 2030 6650 +Total aligned length 4760 6650 +NA50 1610 6650 +NGA50 1610 6650 +NA90 - 6650 +NGA90 - 6650 +auNA 1187.4 6650.0 +auNGA 1198.1 6650.0 +LA50 2 1 +LGA50 2 1 +LA90 - 1 +LGA90 - 1