Mercurial > repos > greg > vsnp_add_zero_coverage
comparison vsnp_add_zero_coverage.xml @ 12:4f68ac34612d draft
"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_add_zero_coverage commit 12290f30f18c10e0e74994b39bdee35ee3d6a726"
| author | greg |
|---|---|
| date | Mon, 15 Nov 2021 21:36:44 +0000 |
| parents | fdfcdc9548ec |
| children |
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| 11:fdfcdc9548ec | 12:4f68ac34612d |
|---|---|
| 56 <test expect_num_outputs="2"> | 56 <test expect_num_outputs="2"> |
| 57 <param name="bam_input" value="bam_input.bam" ftype="bam" dbkey="89"/> | 57 <param name="bam_input" value="bam_input.bam" ftype="bam" dbkey="89"/> |
| 58 <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/> | 58 <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/> |
| 59 <param name="reference_source" value="history"/> | 59 <param name="reference_source" value="history"/> |
| 60 <param name="reference" value="NC_002945v4.fasta" ftype="fasta"/> | 60 <param name="reference" value="NC_002945v4.fasta" ftype="fasta"/> |
| 61 <output name="output_vcf" value="output_vcf.vcf" ftype="vcf" compare="contains"/> | 61 <output name="output_vcf" ftype="vcf"> |
| 62 <output name="output_metrics" file="output_metrics.tabular" ftype="tabular"/> | 62 <assert_contents> |
| 63 <has_size value="259726"/> | |
| 64 </assert_contents> | |
| 65 </output> | |
| 66 <output name="output_metrics" ftype="tabular"> | |
| 67 <assert_contents> | |
| 68 <has_size value="109"/> | |
| 69 </assert_contents> | |
| 70 </output> | |
| 63 </test> | 71 </test> |
| 64 <test expect_num_outputs="2"> | 72 <test expect_num_outputs="2"> |
| 65 <param name="bam_input" value="bam_input.bam" ftype="bam" dbkey="89"/> | 73 <param name="bam_input" value="bam_input.bam" ftype="bam" dbkey="89"/> |
| 66 <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/> | 74 <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/> |
| 67 <param name="reference_source" value="cached"/> | 75 <param name="reference_source" value="cached"/> |
| 68 <output name="output_vcf" value="output_vcf.vcf" ftype="vcf" compare="contains"/> | 76 <output name="output_vcf" ftype="vcf"> |
| 69 <output name="output_metrics" file="output_metrics.tabular" ftype="tabular" compare="contains"/> | 77 <assert_contents> |
| 78 <has_size value="259726"/> | |
| 79 </assert_contents> | |
| 80 </output> | |
| 81 <output name="output_metrics" ftype="tabular"> | |
| 82 <assert_contents> | |
| 83 <has_size value="109"/> | |
| 84 </assert_contents> | |
| 85 </output> | |
| 70 </test> | 86 </test> |
| 71 </tests> | 87 </tests> |
| 72 <help> | 88 <help> |
| 73 **What it does** | 89 **What it does** |
| 74 | 90 |