Mercurial > repos > greg > vsnp_add_zero_coverage
comparison vsnp_add_zero_coverage.xml @ 12:4f68ac34612d draft
"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_add_zero_coverage commit 12290f30f18c10e0e74994b39bdee35ee3d6a726"
author | greg |
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date | Mon, 15 Nov 2021 21:36:44 +0000 |
parents | fdfcdc9548ec |
children |
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11:fdfcdc9548ec | 12:4f68ac34612d |
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56 <test expect_num_outputs="2"> | 56 <test expect_num_outputs="2"> |
57 <param name="bam_input" value="bam_input.bam" ftype="bam" dbkey="89"/> | 57 <param name="bam_input" value="bam_input.bam" ftype="bam" dbkey="89"/> |
58 <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/> | 58 <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/> |
59 <param name="reference_source" value="history"/> | 59 <param name="reference_source" value="history"/> |
60 <param name="reference" value="NC_002945v4.fasta" ftype="fasta"/> | 60 <param name="reference" value="NC_002945v4.fasta" ftype="fasta"/> |
61 <output name="output_vcf" value="output_vcf.vcf" ftype="vcf" compare="contains"/> | 61 <output name="output_vcf" ftype="vcf"> |
62 <output name="output_metrics" file="output_metrics.tabular" ftype="tabular"/> | 62 <assert_contents> |
63 <has_size value="259726"/> | |
64 </assert_contents> | |
65 </output> | |
66 <output name="output_metrics" ftype="tabular"> | |
67 <assert_contents> | |
68 <has_size value="109"/> | |
69 </assert_contents> | |
70 </output> | |
63 </test> | 71 </test> |
64 <test expect_num_outputs="2"> | 72 <test expect_num_outputs="2"> |
65 <param name="bam_input" value="bam_input.bam" ftype="bam" dbkey="89"/> | 73 <param name="bam_input" value="bam_input.bam" ftype="bam" dbkey="89"/> |
66 <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/> | 74 <param name="vcf_input" value="vcf_input.vcf" ftype="vcf" dbkey="89"/> |
67 <param name="reference_source" value="cached"/> | 75 <param name="reference_source" value="cached"/> |
68 <output name="output_vcf" value="output_vcf.vcf" ftype="vcf" compare="contains"/> | 76 <output name="output_vcf" ftype="vcf"> |
69 <output name="output_metrics" file="output_metrics.tabular" ftype="tabular" compare="contains"/> | 77 <assert_contents> |
78 <has_size value="259726"/> | |
79 </assert_contents> | |
80 </output> | |
81 <output name="output_metrics" ftype="tabular"> | |
82 <assert_contents> | |
83 <has_size value="109"/> | |
84 </assert_contents> | |
85 </output> | |
70 </test> | 86 </test> |
71 </tests> | 87 </tests> |
72 <help> | 88 <help> |
73 **What it does** | 89 **What it does** |
74 | 90 |