Mercurial > repos > greg > vsnp_add_zero_coverage

changeset 7:127a00fcd4a8 draft

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Uploaded
author greg
date Mon, 02 Aug 2021 15:07:29 +0000
parents bb6cc994707d
children d6cef3a1bd29
files macros.xml vsnp_add_zero_coverage.xml
diffstat 2 files changed, 29 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu Jul 22 17:53:31 2021 +0000
+++ b/macros.xml	Mon Aug 02 15:07:29 2021 +0000
@@ -1,7 +1,31 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <macros>
     <token name="@WRAPPER_VERSION@">1.0</token>
-    <token name="@PROFILE@">19.09</token>
+    <token name="@PROFILE@">20.09</token>
+    <xml name="biopython_requirement">
+        <requirement type="package" version="1.79">biopython</requirement>
+    </xml>
+    <xml name="numpy_requirement">
+        <requirement type="package" version="1.21.1">numpy</requirement>
+    </xml>
+    <xml name="openpyxl_requirement">
+        <requirement type="package" version="3.0.7">openpyxl</requirement>
+    </xml>
+    <xml name="pandas_requirement">
+        <requirement type="package" version="1.3.0">pandas</requirement>
+    </xml>
+    <xml name="pysam_requirement">
+        <requirement type="package" version="0.15.4">pysam</requirement>
+    </xml>
+    <xml name="pyyaml_requirement">
+        <requirement type="package" version="5.3">pyyaml</requirement>
+    </xml>
+    <xml name="xlrd_requirement">
+        <requirement type="package" version="2.0.1">xlrd</requirement>
+    </xml>
+    <xml name="xlsxwriter_requirement">
+        <requirement type="package" version="1.4.4">xlsxwriter</requirement>
+    </xml>
     <xml name="param_reference_source">
         <param name="reference_source" type="select" label="Choose the source for the reference genome">
             <option value="cached" selected="true">locally cached</option>
--- a/vsnp_add_zero_coverage.xml	Thu Jul 22 17:53:31 2021 +0000
+++ b/vsnp_add_zero_coverage.xml	Mon Aug 02 15:07:29 2021 +0000
@@ -4,9 +4,9 @@
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="3.0.7">openpyxl</requirement>
-        <requirement type="package" version="1.79">biopython</requirement>
-        <requirement type="package" version="1.3.0">pandas</requirement>
+        <expand macro="biopython_requirement"/>
+        <expand macro="openpyxl_requirement"/>
+        <expand macro="pandas_requirement"/>
         <requirement type="package" version="0.16.0.1">pysam</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
@@ -85,6 +85,6 @@
 
  * **Choose the source for the reference genome** - select "locally cached" if the reference associated with the BAM and VCF files is available within the Galaxy environment or "from history" to select the reference from the current history.
     </help>
-    <expand macro="citations" />
+    <expand macro="citations"/>
 </tool>