Mercurial > repos > greg > vsnp_add_zero_coverage
changeset 7:127a00fcd4a8 draft
Uploaded
author | greg |
---|---|
date | Mon, 02 Aug 2021 15:07:29 +0000 (2021-08-02) |
parents | bb6cc994707d |
children | d6cef3a1bd29 |
files | macros.xml vsnp_add_zero_coverage.xml |
diffstat | 2 files changed, 29 insertions(+), 5 deletions(-) [+] |
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--- a/macros.xml Thu Jul 22 17:53:31 2021 +0000 +++ b/macros.xml Mon Aug 02 15:07:29 2021 +0000 @@ -1,7 +1,31 @@ <?xml version='1.0' encoding='UTF-8'?> <macros> <token name="@WRAPPER_VERSION@">1.0</token> - <token name="@PROFILE@">19.09</token> + <token name="@PROFILE@">20.09</token> + <xml name="biopython_requirement"> + <requirement type="package" version="1.79">biopython</requirement> + </xml> + <xml name="numpy_requirement"> + <requirement type="package" version="1.21.1">numpy</requirement> + </xml> + <xml name="openpyxl_requirement"> + <requirement type="package" version="3.0.7">openpyxl</requirement> + </xml> + <xml name="pandas_requirement"> + <requirement type="package" version="1.3.0">pandas</requirement> + </xml> + <xml name="pysam_requirement"> + <requirement type="package" version="0.15.4">pysam</requirement> + </xml> + <xml name="pyyaml_requirement"> + <requirement type="package" version="5.3">pyyaml</requirement> + </xml> + <xml name="xlrd_requirement"> + <requirement type="package" version="2.0.1">xlrd</requirement> + </xml> + <xml name="xlsxwriter_requirement"> + <requirement type="package" version="1.4.4">xlsxwriter</requirement> + </xml> <xml name="param_reference_source"> <param name="reference_source" type="select" label="Choose the source for the reference genome"> <option value="cached" selected="true">locally cached</option>
--- a/vsnp_add_zero_coverage.xml Thu Jul 22 17:53:31 2021 +0000 +++ b/vsnp_add_zero_coverage.xml Mon Aug 02 15:07:29 2021 +0000 @@ -4,9 +4,9 @@ <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="3.0.7">openpyxl</requirement> - <requirement type="package" version="1.79">biopython</requirement> - <requirement type="package" version="1.3.0">pandas</requirement> + <expand macro="biopython_requirement"/> + <expand macro="openpyxl_requirement"/> + <expand macro="pandas_requirement"/> <requirement type="package" version="0.16.0.1">pysam</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ @@ -85,6 +85,6 @@ * **Choose the source for the reference genome** - select "locally cached" if the reference associated with the BAM and VCF files is available within the Galaxy environment or "from history" to select the reference from the current history. </help> - <expand macro="citations" /> + <expand macro="citations"/> </tool>