comparison vsnp_build_tables.xml @ 4:b67a6326a96b draft

"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_build_tables commit 23762af1ec5da6c6f7407f6194d7a2bf9d242618"

3:abfb861df879

            </when>
            <when value="no"/>
        </conditional>
    </inputs>
    <outputs>
        <collection name="excel" type="list" label="${tool.name} on ${on_string}">
            <discover_datasets pattern="(?P&lt;designation&gt;.+)\.(?P&lt;ext&gt;xlsx)" directory="output_excel_dir"/>
        </collection>
    </outputs>
    <tests>
        <test>

            <param name="input_snps_json" value="Mbovis-01_snps.json" ftype="json" dbkey="89"/>
            <param name="input_newick" value="Mbovis-01_snps.newick" ftype="newick" dbkey="89"/>
            <param name="input_avg_mq_json" value="Mbovis-01_avg_mq.json" ftype="json" dbkey="89"/>
            <param name="gbk_param" value="no"/>
            <output_collection name="excel" type="list" count="2">
                <element name="Mbovis-01_snps_cascade_table" file="Mbovis-01_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
                <element name="Mbovis-01_snps_sort_table" file="Mbovis-01_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
            </output_collection>
        </test>
        <test>
            <param name="input_snps_json" value="Mbovis-01D_snps.json" ftype="json" dbkey="89"/>
            <param name="input_newick" value="Mbovis-01D_snps.newick" ftype="newick" dbkey="89"/>
            <param name="input_avg_mq_json" value="Mbovis-01D_avg_mq.json" ftype="json" dbkey="89"/>
            <param name="gbk_param" value="no"/>
            <output_collection name="excel" type="list" count="2">
                <element name="Mbovis-01D_snps_cascade_table" file="Mbovis-01D_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
                <element name="Mbovis-01D_sort_table" file="Mbovis-01D_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
            </output_collection>
        </test>
        <test>
            <param name="input_snps_json" value="Mbovis-01D6_snps.json" ftype="json" dbkey="89"/>
            <param name="input_newick" value="Mbovis-01D6_snps.newick" ftype="newick" dbkey="89"/>
            <param name="input_avg_mq_json" value="Mbovis-01D6_avg_mq.json" ftype="json" dbkey="89"/>
            <param name="gbk_param" value="no"/>
            <output_collection name="excel" type="list" count="2">
                <element name="Mbovis-01D6_cascade_table" file="Mbovis-01D6_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
                <element name="Mbovis-01D6_sort_table" file="Mbovis-01D6_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
            </output_collection>
        </test>
    </tests>
    <help>
**What it does**

4:b67a6326a96b

            </when>
            <when value="no"/>
        </conditional>
    </inputs>
    <outputs>
        <collection name="excel" type="list" format="xlsx" label="${tool.name} on ${on_string}">
            <discover_datasets pattern="(?P&lt;designation&gt;.+)\.(?P&lt;ext&gt;xlsx)" directory="output_excel_dir"/>
        </collection>
    </outputs>
    <tests>
        <test>

            <param name="input_snps_json" value="Mbovis-01_snps.json" ftype="json" dbkey="89"/>
            <param name="input_newick" value="Mbovis-01_snps.newick" ftype="newick" dbkey="89"/>
            <param name="input_avg_mq_json" value="Mbovis-01_avg_mq.json" ftype="json" dbkey="89"/>
            <param name="gbk_param" value="no"/>
            <output_collection name="excel" type="list" count="2">
                <element name="Mbovis-01_snps_newick_cascade_table" file="Mbovis-01_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
                <element name="Mbovis-01_snps_newick_sort_table" file="Mbovis-01_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
            </output_collection>
        </test>
        <test>
            <param name="input_snps_json" value="Mbovis-01D_snps.json" ftype="json" dbkey="89"/>
            <param name="input_newick" value="Mbovis-01D_snps.newick" ftype="newick" dbkey="89"/>
            <param name="input_avg_mq_json" value="Mbovis-01D_avg_mq.json" ftype="json" dbkey="89"/>
            <param name="gbk_param" value="no"/>
            <output_collection name="excel" type="list" count="2">
                <element name="Mbovis-01D_snps_newick_cascade_table" file="Mbovis-01D_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
                <element name="Mbovis-01D_snps_newick_sort_table" file="Mbovis-01D_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
            </output_collection>
        </test>
        <test>
            <param name="input_snps_json" value="Mbovis-01D6_snps.json" ftype="json" dbkey="89"/>
            <param name="input_newick" value="Mbovis-01D6_snps.newick" ftype="newick" dbkey="89"/>
            <param name="input_avg_mq_json" value="Mbovis-01D6_avg_mq.json" ftype="json" dbkey="89"/>
            <param name="gbk_param" value="no"/>
            <output_collection name="excel" type="list" count="2">
                <element name="Mbovis-01D6_snps_newick_cascade_table" file="Mbovis-01D6_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
                <element name="Mbovis-01D6_snps_newick_sort_table" file="Mbovis-01D6_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
            </output_collection>
        </test>
    </tests>
    <help>
**What it does**