Mercurial > repos > greg > vsnp_build_tables

changeset 17:54a7cafb9b47 draft

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"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_build_tables commit de17228778242e5adfd9b1d831794b4dc59b76b9"
author greg
date Mon, 15 Nov 2021 22:47:13 +0000
parents d23172760bf2
children 940b3fbc320f
files test-data/Mbovis-01D6_cascade_table.xlsx test-data/Mbovis-01D6_sort_table.xlsx test-data/Mbovis-01D_cascade_table.xlsx test-data/Mbovis-01D_sort_table.xlsx test-data/Mbovis-01_cascade_table.xlsx test-data/Mbovis-01_sort_table.xlsx test-data/cascade_table.xlsx test-data/sort_table.xlsx vsnp_build_tables.xml
diffstat 9 files changed, 40 insertions(+), 8 deletions(-) [+]
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Binary file test-data/Mbovis-01D6_cascade_table.xlsx has changed
Binary file test-data/Mbovis-01D6_sort_table.xlsx has changed
Binary file test-data/Mbovis-01D_cascade_table.xlsx has changed
Binary file test-data/Mbovis-01D_sort_table.xlsx has changed
Binary file test-data/Mbovis-01_cascade_table.xlsx has changed
Binary file test-data/Mbovis-01_sort_table.xlsx has changed
Binary file test-data/cascade_table.xlsx has changed
Binary file test-data/sort_table.xlsx has changed
--- a/vsnp_build_tables.xml	Sat Nov 13 13:53:10 2021 +0000
+++ b/vsnp_build_tables.xml	Mon Nov 15 22:47:13 2021 +0000
@@ -108,8 +108,16 @@
             <param name="input_avg_mq_json" value="input_avg_mq_json.json" ftype="json" dbkey="89"/>
             <param name="gbk_param" value="no"/>
             <output_collection name="excel" type="list" count="2">
-                <element name="cascade_table" file="cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
-                <element name="sort_table" file="sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
+                <element name="cascade_table" ftype="xlsx">
+                    <assert_contents>
+                        <has_size value="6853" delta="100"/>
+                    </assert_contents>
+                </element>
+                <element name="sort_table" ftype="xlsx">
+                    <assert_contents>
+                        <has_size value="6847" delta="100"/>
+                    </assert_contents>
+                </element>
             </output_collection>
         </test>
         <test>
@@ -137,12 +145,36 @@
             </param>
             <param name="gbk_param" value="no"/>
             <output_collection name="excel" type="list" count="6">
-                <element name="Mbovis-01D6_snps_cascade_table" file="Mbovis-01D6_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
-                <element name="Mbovis-01D6_snps_sort_table" file="Mbovis-01D6_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
-                <element name="Mbovis-01D_snps_cascade_table" file="Mbovis-01D_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
-                <element name="Mbovis-01D_snps_sort_table" file="Mbovis-01D_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
-                <element name="Mbovis-01_snps_cascade_table" file="Mbovis-01_cascade_table.xlsx" ftype="xlsx" compare="sim_size"/>
-                <element name="Mbovis-01_snps_sort_table" file="Mbovis-01_sort_table.xlsx" ftype="xlsx" compare="sim_size"/>
+                <element name="Mbovis-01D6_snps_cascade_table" ftype="xlsx">
+                    <assert_contents>
+                        <has_size value="6854" delta="100"/>
+                    </assert_contents>
+                </element>
+                <element name="Mbovis-01D6_snps_sort_table" ftype="xlsx">
+                    <assert_contents>
+                        <has_size value="6847" delta="100"/>
+                    </assert_contents>
+                </element>
+                <element name="Mbovis-01D_snps_cascade_table" ftype="xlsx">
+                    <assert_contents>
+                        <has_size value="6854" delta="100"/>
+                    </assert_contents>
+                </element>
+                <element name="Mbovis-01D_snps_sort_table" ftype="xlsx">
+                    <assert_contents>
+                        <has_size value="6847" delta="100"/>
+                    </assert_contents>
+                </element>
+                <element name="Mbovis-01_snps_cascade_table" ftype="xlsx">
+                    <assert_contents>
+                        <has_size value="6853" delta="100"/>
+                    </assert_contents>
+                </element>
+                <element name="Mbovis-01_snps_sort_table" ftype="xlsx">
+                    <assert_contents>
+                        <has_size value="6847" delta="100"/>
+                    </assert_contents>
+                </element>
             </output_collection>
         </test>
     </tests>