annotate macros.xml @ 11:04630cab5d2b draft default tip

"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_determine_ref_from_data commit 7f5ebaad2e650c53a8980e8567fe9943f9ccabb6"
author greg
date Mon, 15 Nov 2021 23:14:10 +0000
parents 4a96d885670d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
36bdf8b439ed Uploaded
greg
parents:
diff changeset
1 <?xml version='1.0' encoding='UTF-8'?>
36bdf8b439ed Uploaded
greg
parents:
diff changeset
2 <macros>
36bdf8b439ed Uploaded
greg
parents:
diff changeset
3 <token name="@WRAPPER_VERSION@">1.0</token>
8
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
4 <token name="@PROFILE@">20.09</token>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
5 <xml name="biopython_requirement">
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
6 <requirement type="package" version="1.79">biopython</requirement>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
7 </xml>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
8 <xml name="numpy_requirement">
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
9 <requirement type="package" version="1.21.1">numpy</requirement>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
10 </xml>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
11 <xml name="openpyxl_requirement">
11
04630cab5d2b "planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_determine_ref_from_data commit 7f5ebaad2e650c53a8980e8567fe9943f9ccabb6"
greg
parents: 10
diff changeset
12 <requirement type="package" version="3.0.9">openpyxl</requirement>
8
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
13 </xml>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
14 <xml name="pandas_requirement">
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
15 <requirement type="package" version="1.3.0">pandas</requirement>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
16 </xml>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
17 <xml name="pysam_requirement">
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
18 <requirement type="package" version="0.15.4">pysam</requirement>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
19 </xml>
10
4a96d885670d "planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_determine_ref_from_data commit 60f0060645f11d67acb4c0941c61eb21d4b12042"
greg
parents: 8
diff changeset
20 <xml name="pyvcf_requirement">
4a96d885670d "planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_determine_ref_from_data commit 60f0060645f11d67acb4c0941c61eb21d4b12042"
greg
parents: 8
diff changeset
21 <requirement type="package" version="0.6.8">pyvcf</requirement>
4a96d885670d "planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_determine_ref_from_data commit 60f0060645f11d67acb4c0941c61eb21d4b12042"
greg
parents: 8
diff changeset
22 </xml>
8
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
23 <xml name="pyyaml_requirement">
10
4a96d885670d "planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/sequence_analysis/vsnp/vsnp_determine_ref_from_data commit 60f0060645f11d67acb4c0941c61eb21d4b12042"
greg
parents: 8
diff changeset
24 <requirement type="package" version="5.4.1">pyyaml</requirement>
8
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
25 </xml>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
26 <xml name="xlrd_requirement">
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
27 <requirement type="package" version="2.0.1">xlrd</requirement>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
28 </xml>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
29 <xml name="xlsxwriter_requirement">
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
30 <requirement type="package" version="1.4.4">xlsxwriter</requirement>
ce9f22394382 Uploaded
greg
parents: 4
diff changeset
31 </xml>
4
36bdf8b439ed Uploaded
greg
parents:
diff changeset
32 <xml name="param_reference_source">
36bdf8b439ed Uploaded
greg
parents:
diff changeset
33 <param name="reference_source" type="select" label="Choose the source for the reference genome">
36bdf8b439ed Uploaded
greg
parents:
diff changeset
34 <option value="cached" selected="true">locally cached</option>
36bdf8b439ed Uploaded
greg
parents:
diff changeset
35 <option value="history">from history</option>
36bdf8b439ed Uploaded
greg
parents:
diff changeset
36 </param>
36bdf8b439ed Uploaded
greg
parents:
diff changeset
37 </xml>
36bdf8b439ed Uploaded
greg
parents:
diff changeset
38 <xml name="citations">
36bdf8b439ed Uploaded
greg
parents:
diff changeset
39 <citations>
36bdf8b439ed Uploaded
greg
parents:
diff changeset
40 <citation type="bibtex">
36bdf8b439ed Uploaded
greg
parents:
diff changeset
41 @misc{None,
36bdf8b439ed Uploaded
greg
parents:
diff changeset
42 journal = {None},
36bdf8b439ed Uploaded
greg
parents:
diff changeset
43 author = {1. Stuber T},
36bdf8b439ed Uploaded
greg
parents:
diff changeset
44 title = {Manuscript in preparation},
36bdf8b439ed Uploaded
greg
parents:
diff changeset
45 year = {None},
36bdf8b439ed Uploaded
greg
parents:
diff changeset
46 url = {https://github.com/USDA-VS/vSNP},}
36bdf8b439ed Uploaded
greg
parents:
diff changeset
47 </citation>
36bdf8b439ed Uploaded
greg
parents:
diff changeset
48 </citations>
36bdf8b439ed Uploaded
greg
parents:
diff changeset
49 </xml>
36bdf8b439ed Uploaded
greg
parents:
diff changeset
50 </macros>
36bdf8b439ed Uploaded
greg
parents:
diff changeset
51