Mercurial > repos > greg > vsnp_get_snps

diff test-data/all_vcf3.fasta @ 4:da20c7c76d06 draft

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author greg
date Thu, 17 Jun 2021 13:23:41 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/all_vcf3.fasta	Thu Jun 17 13:23:41 2021 +0000
@@ -0,0 +1,12 @@
+>01_1787_FL_Zoo_Jaguar_vcf
+ATCTTGTGCACAGCCGGCGTCGTGTGACTATGTGCGATCTACGTGAGACTCTTGGCGGTTCGGATCAGTCCATTATGGCCACTTCATGGGGTCAAAACTACGCGGCTAAGCTCAACCAGATTGAGCACGGTGCGCGAACGCCCGATGAGCCACCGTCTCGAAGGGCAAAATAGTCCCCCATTGGCACGCGTCGCCCGCAGGGTACGTTTGTCGTCAATACCACCACTAACACCAAATTAGCACCTTCGAGGAGGCGTGGTAGGAGGTTGGTCACCCCATACCGTAAACAACGCTTTCGCAAGCACACGGACCCGTGCGTCATACAGGCTTAGGACATGGTCTACATACGGCCGTGCCAGGCAACGGTTGGTAATTTAACATACCGGAGAACACTCTCCCTTGCGGGGAACGACCTGCAGAGCCCGTAGTGACAGACCAGGCTCCGACTATTGGCAAAGTGTATTCTGAAGGCGACATTGAGTTTAGTTCGAATAGAGCCAGCGGTGTACGTCCAGCAATAGCTGAAATCCGAGGCAAATGGTTACAGTAGAATCCAATCTAACGTGGCATACGGCCACAGACTGACTAGGGGCTTTGGCTGGGGAACGAAATGTGTGATGACTTGCGGTATGGAGAGGGATCCGACCCGGTTCAGTAACAAGTGGTCGTTCGCAGCGCGCTGCTATTTCCTGGACATGACACCTCTCCTCCACTGCGCAGCCTCTAAGGTAGTCCCTTGCGGCGCCCATTTTGACCCCACTATATCACAGCGTCTTCACTCTGCGCTACGTCC
+>BCG_Pasteur_Unknown_FR_SRR8886989_vcf
+GTNCCTNATGNGATTAATGCAGCACTNTGATGGATACTATNNCCNATNTCTCCGGCCGC-NAACCGCCTATATNGCGCGGGGTCTGCTTGCGCNGCNGCGGATNCGCGGCNNNNTNTCGNGAAGCTGGGACCTGATGGNACCCCCCNGCCN-NAANTCTAGTCTTTNCNGCGCCCNNNTGGCNAGTTGACCT-TCTGTGNNGTNTACCCATTTCTGACGCGGNNGCNGGCGCCNNGNCGATGACGCT-GGCCNATCCCACCNANAGTCAACNGNCTCGNGNTACGNCCGGAGACCTGNAGGACGANGACCTTCANGAGNGCTAGGAGTCGGAGGTNNTACGTGTGCGTTTTTCCAGGGAACGATTACNAGCGGNTNGGTGCNTTCGNNGGCGTNTCGNTCNACTCCACGAACTAC-TGTGAATNAGGNCAGTGAGTAGGGTCCTAGGGGCCAATNAGGGGGGTTCTGAGACTACTGACTGAGCGGACCANAGCNAATNAGAAANAGGCTNCTTGTGGGGGCYCAAGGCANAAAANGAGC-ACCGTGNTNGAANCTCNCGCNGCAGACTGCGCAGTTGGGGGTTAGGTGNAAATCNCGGGCACAANGTGTGGGGCATGACCGACCAT-GCGCNGCAAGAGGCATAGTTTGTCTNGGCCGTGTAGTG--GTCTACCACGGNTNAGCACCCATTNNNTGCAGNGNTCCCNNTTCCGCACTAGGAGCACCGATCGTCNTCNCATACCATTTAGCCTCAACTCATCACAATNAGNTTCTNTTGTCACAACNCCNANGT
+>02_0585_COA_TX_Fed_vcf
+ATCTTGTGCGCAGCCGGCGTCATGTGACTGCATGCGATCTACGTGGGACTCTTGGTGGCTCGGATCAGGCCGTTGTGCCCACCTCATGGTGTTAAAACTACGCGGCTAAGCTCAACCAAATTGGGCACAGTCCGCTAACACATCATGACTCGCCGTCTCGGAGGGTACAATAGTTCCCCATTGGCACACGTCGCTCGCAGGGCACGTTTGCTGTTAATATCACCATTAACAATAAATTGGCACCTCCGAGGAGGCGTGGTAGGAGGTCGGCCACTCCATACCGTAAATGACGCTTTCGCAAGCAAACGGACTTATTCCTCATGCAGACTTAGGACATGGTCTACATACGTCCGTGCCAAGCAACGGTTGGTAATTTAACACACCGGAGAGAATTCTCCCTTGTGGGGAAAGACCTGCGGAGCCCGTGGTGACAGACCATTCTACGACTATTAGCAGAATATATTCTGAAGGCGACATTGAGGTTAGCCAGGACAGAGCCAGCGGTATACGCCCAGGAATAGCTGAAGTCCGGGGCAGATGGTCACAGTAGTCTTCAATCTAACGTGGTACACGGCCAGGAGCTGACTAGGGGCTTCGAGTGGGGAACAAAATGTGTAATGACTTGCGGCACGAAGGGGGGCCCGACCCAGCCCAATAACAAATGATCACCCGTAGACCGCTGCTGTTTCCGGGACATGACACCTTTCCTCCAGTGCGCAGACTATAAGGTAGTCCCTTGCAGGGCTCCGCTTGACCCGGTTATGTCACAGCGTCTTCACTCTGCGCTACGTCC
+>BCG_Tokyo_Unknown_JP_DRR029468_vcf
+GTGCCTCATGAGATTAATGCAGCACTCTGATGGATACTATCTCCCATGTCCCCCGCCGCCAAACCGCCTATATCGCGCGGGGTCTGCTTGCGCGGCGGCGGATACGCGGCACTGTTTCGAGAAGCTGGGACCTGATGGTACCCCCCAGCCT-TAATTCTAGTCTTTGCCGCGCCCCTCTGTCGAGTTGACCTGTCTACGTATTGTACCCATTTCTGACGCGGCTGCCGGCGCCGGGCCGATGACGCTAGGCCAATCCCACCAAGATCCAACCGTCTAGTGTTACGACCGGAGACCCGAAGGAAGAAGACCTTCACGAGGGCTAGGAGCCGGAGGTGCTACGCGTACGTTTTTCCAGGGAACGGTTACGGTCGGTTCGGTGCGTTCGGAGGCGTCTCGTTCTACTCCACGAACTACGTGTGAATTAGGACAGTGAGCAGGGTCCTAGGGGCCAATGAGGGGGGTTCTGAGGCTACTGACTGAGCGGACCAAAGCAGGTCAGAAAGAGGCTCCTTGTGGGGGCTCAGGGCACAAAGGGAGCAACCGTGAGGGAACCTCGCGCGGTAGACTGCGCAATTGGGGGTCAGGTGCAAACCGCGGGCAGAAGGTGAGGGATACGACCAACCATAGCGCAGCAAGAGGCATAGTTTGTCTGGGCCGTGTAGTG--GTCTACCACGGGCCAGTACCCANTTTATGCAGCGGCCCCTTGTCCGCATGAGGAGCATCGATCGTCCTCCCATACCATTCAGCCCCGATTCATCGCAATCAGATTCTTCTGCCACAACTCCGATGT
+>02_5877_MEX_TX_Fed_vcf
+ACCTTGTGCGCAGCCGGCATCATGTGACTACATGCGACCCACGTGGGACTCTTGACGACTCGGATCAGTCCAATGTACCCACCTCATGGTGTCAAAACTACGCGGCTAAGCTCAACCAAATTGGGCACGGTCCTCTAACATACCATGACTCGCCGTCTCGGAGGGTACAATAGTTCCCCATTGGCACGCGTCGCTCGCAGGGCACGTTTGTTGTTACTACCACCATTAATACTAAATTGGCACGTCCGAAGAGGCGTGGTAGGAGGTCGGCCACTCCATACCGTAAATGACTCTTTCGCAAGCAAACGGACTCATGCCTCACGCAGACTTAGCACATGGTCTACATACGTCCGTGCCAAGGAACGGTTGGTAATCTAACACACCGAAGAGAATTCTCCCTTGCGGGGAAAGACCTACGGAGCCCGTGGTGACAGACCATTCTCCGACTATTAGCAGAATGTACCTCAGAGGCGACATTGAGGTTAGCCAGAACAGAGCCAGCGGTATACGCCCAGGAATAGCTGAAGTCCGAGGCAGATGGTCACAGTAATCTTCAATCTAACGTGGTACATGGCCAGGGGCTGACCAGGGGCTTCAGGTGGGGAACGAAATGTGTACTGACTTGCGACACGGAGGAGAGCCCGACCCGGCCCAGTAACAAATGACCACCCGTAGACCGCTGCTATTTCCGGGACATGACACCTCTCCTCTAGTGCGCATACTATAAGGTAGTCCTTTGCAGCGCTCAGCTTGACCCCATTATATCACAGCGTCTTCACTCTGCGCTACGTCC
+>root
+ATCTTTTGCGCAGCCGGCGCCGTGTGACTATGGGCGATCTACGTGAGACCCCTGGCGGCTCGGATCACTCCATTGTGCCCACTTCGTGGGGTCAAAACTACGCGGGTGACCTCAACCCGGTTGGCCGCGGTCCGCTAACACCCCATGACCCGCCGCTTCGGAGGGTACAGCAGTCGCTCATTAGCACGCGTCACCCGCAGGGTACATCCGTTGTTAACACCATCGCTAACACCAAATTGGCACCTCCGGGCAGGCCTCATCGGAGGTCGGCGGCCTCGCACCGCAGACGGCGCCCTCGCAAGCAACCGGACTCATGCGTCATACAGGCTTAGGACATGGTCTACATACGTCCGTGCCAAGCAATGGTTGGTAACTTAACACACCGGAGGGCATTCCCCCTGGCGCCGATAGACATGTGGAGCCCGTGGTGGCAGACCAGGTTCTGGCTGTCAACAAGGTGTATTCTGAAGCCGACATTGAAGTTAGCCAGAACCGAGTCAACGATGTACGCCCAGGAAGAGCTGAAGTCTAAGGCAAATGGTCACAGTAGAATCCAATCTAGCGTGGTACACGGCCGGGGGCTGACTAGGGGCTTCGGGTGGGGAGCGAAATGTGTGATGACTTACGGCGCGGAGAGAGGCCCGGCCCGGCTCAGTAACAAATGGTTGTCCGCAGCGCTCTGCCATTTCCTGGGCATGATACCTCTCCTCCAGTGCGCAGACCATAAGGCGGTTCCTTGCAGCGCTCAGCCTGAACCCATTATATCACAGCGCCGTTACTCTGCGCTACGCGC