Mercurial > repos > gregor.m > spyboat

annotate run_tests.sh @ 5:d5a4180410c4 draft default tip

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"planemo upload commit 7bc843096b70fe1c8fc149e69d8f87fceac4eb3b"
author gregor.m
date Sat, 28 Nov 2020 18:50:09 +0000
parents a4c6fcf2c456
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1d62de03829d "planemo upload commit c6cd06d44dce1eef9136017289d362f144687dc1"
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1 #!/usr/bin/env bash
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4 INPUT_PATH='./test-data/test-movie.tif'
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5 SCRIPT_PATH='.'
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7 # set to galaxy defaults!!
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8 python3 $SCRIPT_PATH/spyboat_cli.py --input_path $INPUT_PATH --phase_out phase_out.tif --period_out period_out.tif --dt 1 --Tmin 20 --Tmax 30 --nT 150 --ncpu 6 --Tcutoff 40
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10 # additional paramters
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11 #--masking static --mask_frame 10 --mask_thresh 300 --rescale 80 --gauss_sigma 1
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13 printf "\n"
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14 # printf "\nError examples:\n"
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