Mercurial > repos > guerler > spring_cross
view spring_cross.xml @ 2:db9f846c70bb draft default tip
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author | guerler |
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date | Thu, 08 Apr 2021 18:21:38 +0000 |
parents | 3175a61346e8 |
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<tool id="spring_cross" name="SPRING Cross" license="MIT" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> <description>reference builder</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ spring_cross.py @pdb_source@ -o '$output' -g '$log' ]]></command> <inputs> <expand macro="pdb_source" /> <expand macro="logfile" /> </inputs> <outputs> <data format="tabular" name="output" label="SPRING Cross Reference" /> <data format="txt" name="log" label="SPRING Cross Log"> <filter>logfile</filter> </data> </outputs> <tests> <test expect_num_outputs="1"> <conditional name="pdb_source"> <param name="pdb_source_selector" value="history" /> <param name="ffindex" value="cross/pdb.ffindex" /> <param name="ffdata" value="cross/pdb.ffdata" /> </conditional> <param name="logfile" value="false" /> <output name="output" file="cross/reference.tabular" /> </test> <test expect_num_outputs="1"> <conditional name="pdb_source"> <param name="pdb_source_selector" value="indexed" /> <param name="pdb" value="pdb02_cross" /> <param name="zipped" value="gz" /> </conditional> <param name="logfile" value="false" /> <output name="output" file="cross/reference.tabular" /> </test> <test expect_num_outputs="2"> <conditional name="pdb_source"> <param name="pdb_source_selector" value="indexed" /> <param name="pdb" value="pdb01_cross" /> </conditional> <param name="logfile" value="true" /> <output name="output" file="cross/reference.tabular" /> </test> </tests> <help><![CDATA[ **What it does** Creates a 2-column cross reference between a list of input chains and all interacting chains found in the provided PDB database. This reference is required as input for the SPRING min-Z calculator. ]]></help> <expand macro="citations" /> </tool>