annotate temp/tmalign.monomerA.rebuilt.templateA.out @ 17:c790d25086dc draft

"planemo upload commit b0ede77caf410ab69043d33a44e190054024d340-dirty"

 *********************************************************************
 * TM-align (Version 20190822): protein structure alignment          *
 * References: Y Zhang, J Skolnick. Nucl Acids Res 33, 2302-9 (2005) *
 * Please email comments and suggestions to [e-mail]   *
 *********************************************************************

Name of Chain_1: temp/monomerA.rebuilt.pdb (to be superimposed onto Chain_2)
Name of Chain_2: temp/templateA.pdb
Length of Chain_1: 587 residues
Length of Chain_2: 756 residues

Aligned length= 434, RMSD=   5.02, Seq_ID=n_identical/n_aligned= 0.173
TM-score= 0.58734 (if normalized by length of Chain_1, i.e., LN=587, d0=8.49)
TM-score= 0.47130 (if normalized by length of Chain_2, i.e., LN=756, d0=9.42)
(You should use TM-score normalized by length of the reference structure)

(":" denotes residue pairs of d <  5.0 Angstrom, "." denotes other aligned residues)
AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAG------------------------------------------------------------------------------------------------------------------------------------------------DYILANTCTER--LKLFAAETLKATEETFKLS-YGIATVREVLSDREL------------HLSWEVGKPRPPLNRNY-VFTGYRVT----K--NSKVQIGEYTFEKGDYGDAVVYRGTTTYKL------------N--VGDYFVLTSH--T--VP-LS-A-----------P-TLV-PQEHYVRITGLYPTLNI-SD---EFSS-NVANYQKV-GQKYSTLQGPPGTGKSHFAIGLALYY-PSA-RIVYTA-CSHAAVDALCEKALKYLPIDCSRIIPARARVE--------CF-DKF-----------------------------------KVNS-TLEQYVFCT----VNA--LPETTADIVVFDEI-SATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLKT-I-GPDFLGTCRRCPAEIVDTVSALVYD-NKLKAHKD---K------------SAQCFKFYKGVITHD--VSSAINRPQIGVVREFLTRN-PAWR-K--AVFISPYNSQNAVA-SKI--LG------LP---TQTVDSSQGSEYDYVIFTQ-T----TETAHSCNVNRFNVAITRAKVGILC-I-S---D--RDLYDKL-QF--TS-LEIP----RRN------
                                                                                                                                                                                                                                                                     .. ::...:..  ::::::::::::::::..: .:::.....                  ...         ...   ..::....    .  ..:.::.....       .......                 .  ...::::::.  :  :: :: :           : .:. ..:.:. :::::::::. :.   ::.: :::::::: ::::::::.::::::::::::::::: ::: :::::: ::::::::::::::::::: .:.:. .:.::.        :: ::.                                   .::. .::.:::::    :::  ::::.: ::::::: :::::::::::::::: ::::::::::::::::::...... .::::::::.: . .:::::::::::::::::::::::: ::::::::   :            :::::.:....:::.  ::::::.............. .:.. .  ::::::::::...: .:.  .:      ..   ::::::::::::::::::: :    :::.::::::::::::::::::::: : :   :  :::::.. ::  :: :::.    .:.      
---------------------------------------------------------------------------------------------------------------------NSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSVVLLCRIPCAQTKWDTDQWQPLIEDRQLLSWVAEQPTEEEKLKARLITPSQISKLEAKWRSNKDATIP-PLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQEHISV------SWSLALNNRHLASFT---------KVA--IGDEMILWYSGMQHPDWEGRGYIVRLP-------NDTFTLE-----LKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDI-SFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLK-VVRLT-AKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDTKFR-TVLIDESTQASEPECLIPIVKGAK-QVILVGDHQQLGPVILERKAADAG-LKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLCTVQLV

Total CPU time is  1.46 seconds