Mercurial > repos > guerler > springsuite
annotate planemo/lib/python3.7/site-packages/cwltool/schemas/v1.1/CONFORMANCE_TESTS.md @ 0:d30785e31577 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author | guerler |
---|---|
date | Fri, 31 Jul 2020 00:18:57 -0400 |
parents | |
children |
rev | line source |
---|---|
0
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
1 # Common workflow language conformance test suite |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
2 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
3 The conformance tests are intended to test feature coverage of a CWL |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
4 implementation. It uses the module "cwltool.cwltest" from the cwltool |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
5 reference implementation. |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
6 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
7 ## Usage |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
8 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
9 ``` |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
10 $ ./run_test.sh |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
11 --- Running conformance test draft-3 on cwl-runner --- |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
12 Test [49/49] |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
13 All tests passed |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
14 ``` |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
15 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
16 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
17 ## Options |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
18 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
19 RUNNER=other-cwl-runner |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
20 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
21 The CWL implementation to be tested. |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
22 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
23 -nN |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
24 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
25 Run a single specific test number N. |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
26 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
27 For example, to run conformance test 15 against the "cwltool" |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
28 reference implementation: |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
29 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
30 ``` |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
31 $ ./run_test.sh RUNNER=cwltool -n15 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
32 Test [15/49] |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
33 All tests passed |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
34 ``` |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
35 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
36 ## Notes |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
37 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
38 _NOTE_: For running on OSX systems, you'll need to install coreutils via brew. This will add to your |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
39 system some needed GNU-like tools like `greadlink`. |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
40 |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
41 1. If you haven't already, install [brew](http://brew.sh/) package manager in your mac |
d30785e31577
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
42 2. Run `brew install coreutils` |