Mercurial > repos > guerler > springsuite
changeset 12:0ea00dce62ab draft
"planemo upload commit 373d73ef3a09902e75f10084e30b271d84a6d7b1"
| author | guerler |
|---|---|
| date | Fri, 25 Sep 2020 19:39:11 +0000 |
| parents | 21a7dd67b483 |
| children | f8ba4dd48cbd |
| files | spring_minz.xml test-data/dbCAN_result.txt |
| diffstat | 2 files changed, 18 insertions(+), 2 deletions(-) [+] |
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--- a/spring_minz.xml Fri Sep 25 19:07:14 2020 +0000 +++ b/spring_minz.xml Fri Sep 25 19:39:11 2020 +0000 @@ -8,8 +8,9 @@ echo '${input.element_identifier}' >> 'input_list' && #end for #for target in $targets - python3 '$__tool_directory__/spring_minz.py' -m '$minscore' -t '${str(target)}' -n '${target.element_identifier}' -c '$crossreference' -x '$idx' -o '$output' -l input_list -i inputs + python3 '$__tool_directory__/spring_minz.py' -m '$minscore' -t '${str(target)}' -n '${target.element_identifier}' -c '$crossreference' -x '$idx' -o '$output' -l input_list -i inputs && #end for + echo 0 ]]></command> <inputs> <param format="txt" name="targets" type="data_collection" label="Target Profiles" help="Homology search result of target/query profiles `hhr`."/> @@ -25,20 +26,29 @@ <test> <param name="targets"> <collection type="list"> + <element name="6W4H_A.hhr" value="6W4H_A.hhr" /> + <element name="6W4H_B.hhr" value="6W4H_B.hhr" /> + <element name="6W9C_A.hhr" value="6W9C_A.hhr" /> + <element name="6W9Q_A.hhr" value="6W9Q_A.hhr" /> + <element name="6W37_A.hhr" value="6W37_A.hhr" /> + <element name="6WEY_A.hhr" value="6WEY_A.hhr" /> + <element name="6WJI_A.hhr" value="6WJI_A.hhr" /> + <element name="6WLC_A.hhr" value="6WLC_A.hhr" /> <element name="7BQY_A.hhr" value="7BQY_A.hhr" /> </collection> </param> <param name="idx" value="10"/> <param name="inputs"> <collection type="list"> - <element name="6W37_A.hhr" value="6W37_A.hhr" /> <element name="6W4H_A.hhr" value="6W4H_A.hhr" /> <element name="6W4H_B.hhr" value="6W4H_B.hhr" /> <element name="6W9C_A.hhr" value="6W9C_A.hhr" /> <element name="6W9Q_A.hhr" value="6W9Q_A.hhr" /> + <element name="6W37_A.hhr" value="6W37_A.hhr" /> <element name="6WEY_A.hhr" value="6WEY_A.hhr" /> <element name="6WJI_A.hhr" value="6WJI_A.hhr" /> <element name="6WLC_A.hhr" value="6WLC_A.hhr" /> + <element name="7BQY_A.hhr" value="7BQY_A.hhr" /> </collection> </param> <param name="crossreference" value="dbCAN_random.txt"/>
--- a/test-data/dbCAN_result.txt Fri Sep 25 19:07:14 2020 +0000 +++ b/test-data/dbCAN_result.txt Fri Sep 25 19:39:11 2020 +0000 @@ -1,3 +1,9 @@ +6W4H_A.hhr 6W4H_A.hhr 24.7 +6W9Q_A.hhr 6W4H_B.hhr 22.3 +6W9Q_A.hhr 6W9C_A.hhr 21.0 +6W37_A.hhr 6W9C_A.hhr 21.3 +6W37_A.hhr 6W4H_B.hhr 16.0 +6W37_A.hhr 6W37_A.hhr 14.0 7BQY_A.hhr 6W9C_A.hhr 24.2 7BQY_A.hhr 6W4H_B.hhr 24.0 7BQY_A.hhr 6W37_A.hhr 14.0