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changeset 3:c4b2e16845ab draft

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"planemo upload commit 63ddea9328a66c7a7bc5071e71128dad66481550"
author guerler
date Fri, 31 Jul 2020 03:35:49 -0400
parents cc21dac19d25
children bde9a1a44a36
files spring_minz.xml
diffstat 1 files changed, 3 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/spring_minz.xml	Fri Jul 31 01:49:36 2020 -0400
+++ b/spring_minz.xml	Fri Jul 31 03:35:49 2020 -0400
@@ -1,15 +1,11 @@
 <tool id="spring_minz" name="SPRING min-Z" version="0.1.0" python_template_version="3.5">
-    <description>filter operation</description>
+    <description>Filter operation</description>
     <code file="spring_minz.py"/>
     <command detect_errors="exit_code"><![CDATA[
         mkdir -p inputs &&
         #for input in $inputs
-            #try
-                ln -s '${str(input)}' 'inputs/${input.name}' &&
-                echo '${input.name}' >> 'input_list' &&
-            #except
-                #pass
-            #end try
+            link '${str(input)}' 'inputs/${input.name}' &&
+            echo '${input.name}' >> 'input_list' &&
         #end for
         python3 '$__tool_directory__/spring_minz.py' -m '$minscore' -t '$target' -c '$crossreference' -o '$output' -l input_list -i inputs
     ]]></command>