Mercurial > repos > hammock > hammock

changeset 7:466c62f481d3 draft

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Uploaded
author hammock
date Wed, 01 Nov 2017 06:24:06 -0400
parents 2277dd59b9f9
children b64758fa3a72
files tool_dependencies.xml
diffstat 1 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Nov 01 05:54:28 2017 -0400
+++ b/tool_dependencies.xml	Wed Nov 01 06:24:06 2017 -0400
@@ -15,7 +15,7 @@
                    			<source>$REPOSITORY_INSTALL_DIR/external_tools/darwin/clustal-omega-1.2.0-macosx</source>
                  	  		<destination>$INSTALL_DIR</destination>
                 		</action>
-						<action type="shell_command">sed -i "s%clustalOmegaCommand=clustalo%clustalOmegaCommand=$INSTALL_DIR/clustal-omega-1.2.0-macosx%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
+						<action type="shell_command">sed -i '' -e "s%clustalOmegaCommand=clustalo%clustalOmegaCommand=$INSTALL_DIR/clustal-omega-1.2.0-macosx%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
 					</actions>
 				</actions_group>
 			</install>
@@ -45,8 +45,8 @@
                     		<source>$REPOSITORY_INSTALL_DIR/external_tools/darwin/hmmsearch</source>
                     		<destination>$INSTALL_DIR</destination>
                 		</action>
-						<action type="shell_command">sed -i "s%hmmbuildCommand=hmmbuild%hmmbuildCommand=$INSTALL_DIR/hmmbuild%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
-						<action type="shell_command">sed -i "s%hmmsearchCommand=hmmsearch%hmmsearchCommand=$INSTALL_DIR/hmmsearch%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
+						<action type="shell_command">sed -i '' -e "s%hmmbuildCommand=hmmbuild%hmmbuildCommand=$INSTALL_DIR/hmmbuild%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
+						<action type="shell_command">sed -i '' -e "s%hmmsearchCommand=hmmsearch%hmmsearchCommand=$INSTALL_DIR/hmmsearch%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
 					</actions>
 				</actions_group>
 			</install>
@@ -88,9 +88,9 @@
                     		<source>$REPOSITORY_INSTALL_DIR/external_tools/darwin/lib</source>
                     		<destination>$INSTALL_DIR</destination>
                 		</action>
-						<action type="shell_command">sed -i "s%hhmakeCommand=hhmake%hhmakeCommand=$INSTALL_DIR/hhmake%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
-						<action type="shell_command">sed -i "s%hhsearchCommand=hhsearch%hhsearchCommand=$INSTALL_DIR/hhsearch%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
-						<action type="shell_command">sed -i "s%reformatCommand=reformat.pl%reformatCommand=$INSTALL_DIR/lib/hh/scripts/reformat.pl%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
+						<action type="shell_command">sed -i '' -e "s%hhmakeCommand=hhmake%hhmakeCommand=$INSTALL_DIR/hhmake%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
+						<action type="shell_command">sed -i '' -e "s%hhsearchCommand=hhsearch%hhsearchCommand=$INSTALL_DIR/hhsearch%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
+						<action type="shell_command">sed -i '' -e "s%reformatCommand=reformat.pl%reformatCommand=$INSTALL_DIR/lib/hh/scripts/reformat.pl%g" $REPOSITORY_INSTALL_DIR/Hammock/settings/settings.prop</action>
 						<action type="set_environment">
 							<environment_variable name="HHLIB" action="set_to">$INSTALL_DIR/lib/hh</environment_variable>   
 						</action>