Mercurial > repos > hogart > unafold
view README.md @ 4:bda10049b902 draft
Uploaded correct files instead of GitHub fetched
author | hogart |
---|---|
date | Tue, 10 Mar 2015 05:54:18 -0400 |
parents | 75a1e3d0842f |
children | 5f95a9afe2ee |
line wrap: on
line source
# Galaxy Tool wrapper for UNAFold # This is the [Galaxy](http://usegalaxy.org) wrapper for the [UNAFold](http://mfold.rna.albany.edu/?q=DINAMelt/software). UNAFold software was developed for nucleic acid folding and hybridization prediction ([doi: 10.1007/978-1-60327-429-6_1](http://dx.doi.org/10.1007/978-1-60327-429-6_1), [doi: 10.1093/nar/gki591](http://dx.doi.org/10.1093/nar/gki591)). This wrapper is not yet deposited in the Tool-Shed repository, so this is the single place where it can downloaded. ## Installation ## * Save [UNAFold.pl](http://mfold.rna.albany.edu/?q=DINAMelt/software) in your $PATH, that is accesable to the Galaxy. * Create the directory `unafold` in `$GALAXY_DIR/tools/` and copy `unafold.xml` and `unafold.sh` files into it. * Add the Galaxy tool definition to the `tools_conf.xml`: ```html <section id="unafold_tool" name="UNAFold"> <tool file="unafold/unafold.xml" /> </section>` ``` * Please, be sure that `zip` datatype is registered in your Galaxy instance. If not, add the following string to the `datatypes_conf.xml` file: ```html <datatype extension="zip" type="galaxy.datatypes.binary:Binary" mimetype="application/zip" subclass="True" /> ``` * Reload the Galaxy instance.