4
|
1 # Galaxy Tool wrapper for UNAFold #
|
2
|
2
|
4
|
3 This is the [Galaxy](http://usegalaxy.org) wrapper for the [UNAFold](http://mfold.rna.albany.edu/?q=DINAMelt/software). UNAFold software was developed for nucleic acid folding and hybridization prediction ([doi: 10.1007/978-1-60327-429-6_1](http://dx.doi.org/10.1007/978-1-60327-429-6_1), [doi: 10.1093/nar/gki591](http://dx.doi.org/10.1093/nar/gki591)). This wrapper is not yet deposited in the Tool-Shed repository, so this is the single place where it can downloaded.
|
2
|
4
|
4
|
5 ## Installation ##
|
2
|
6
|
4
|
7 * Save [UNAFold.pl](http://mfold.rna.albany.edu/?q=DINAMelt/software) in your $PATH, that is accesable to the Galaxy.
|
2
|
8
|
4
|
9 * Create the directory `unafold` in `$GALAXY_DIR/tools/` and copy `unafold.xml` and `unafold.sh` files into it.
|
|
10 * Add the Galaxy tool definition to the `tools_conf.xml`:
|
|
11 ```html
|
|
12 <section id="unafold_tool" name="UNAFold">
|
|
13 <tool file="unafold/unafold.xml" />
|
|
14 </section>`
|
|
15 ```
|
2
|
16
|
4
|
17 * Please, be sure that `zip` datatype is registered in your Galaxy instance. If not, add the following string to the `datatypes_conf.xml` file:
|
|
18 ```html
|
|
19 <datatype extension="zip" type="galaxy.datatypes.binary:Binary" mimetype="application/zip" subclass="True" />
|
|
20 ```
|
2
|
21
|
4
|
22 * Reload the Galaxy instance.
|