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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
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5 </set_environment>
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6
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6
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7 <package name="perl" version="5.18.1">
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8 <install version="1.0">
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9 <actions>
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10 <action type="setup_perl_environment">
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11 <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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12 <package name="perl" prior_installation_required="True" version="5.18.1" />
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13 </repository>
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14
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15 <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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16 <package name="R" version="3.0.1" />
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17 </repository>
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18
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19 <!-- allow downloading and installing an Perl package from cpan.org-->
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20 <package>http://search.cpan.org/CPAN/authors/id/T/TO/TODDR/IPC-Run-0.94.tar.gz</package>
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21 <package>http://search.cpan.org/CPAN/authors/id/A/AB/ABIGAIL/Regexp-Common-2013031301.tar.gz</package>
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22 <package>http://search.cpan.org/CPAN/authors/id/F/FA/FANGLY/Statistics-R-0.33.tar.gz</package>
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23 <package>http://search.cpan.org/CPAN/authors/id/J/JM/JMCNAMARA/OLE-Storage_Lite-0.19.tar.gz</package>
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24 <package>http://search.cpan.org/CPAN/authors/id/J/JM/JMCNAMARA/Spreadsheet-WriteExcel-2.40.tar.gz</package>
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25 <package>http://search.cpan.org/CPAN/authors/id/D/DL/DLUX/Parallel-ForkManager-0.7.5.tar.gz</package>
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26 </action>
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27 <action type="set_environment">
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28 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5</environment_variable>
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29 </action>
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30 </actions>
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31 </install>
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32 </package>
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33
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34 <package name="perl" version="5.18.1">
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35 <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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36 </package>
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37
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38 <package name="weblogo" version="3.3">
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39 <repository changeset_revision="648e4b32f15c" name="package_weblogo_3_3" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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40 </package>
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41
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42 <package name="numpy" version="1.9">
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6
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43 <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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44 </package>
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45
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6
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46 <package name="R" version="3.1.2">
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0
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47 <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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48 </package>
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49
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50 <package name="mutspec" version="0.1">
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51 <repository changeset_revision="63cc1719e1aa" name="package_r_mutspec_0_1" owner="iarc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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52 </package>
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53
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54 </tool_dependency>
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