Mercurial > repos > iarc > mutspec
comparison mutspecCompare_wrapper.sh @ 0:8c682b3a7c5b draft
Uploaded
| author | iarc |
|---|---|
| date | Tue, 19 Apr 2016 03:07:11 -0400 |
| parents | |
| children | 46a10309dfe2 |
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| -1:000000000000 | 0:8c682b3a7c5b |
|---|---|
| 1 #!/bin/bash | |
| 2 | |
| 3 newsign=$1 | |
| 4 html=$2 | |
| 5 ref=$3 | |
| 6 | |
| 7 output_dir=${html%%.*}_files | |
| 8 | |
| 9 matrix=${newsign%.*}_files/NMF/Files/MatrixW-Normto100.txt | |
| 10 | |
| 11 mkdir $output_dir | |
| 12 | |
| 13 Rscript --no-save $SCRIPT_PATH/R/compareSignature_Galaxy.r $ref $matrix $output_dir 2>&1 | |
| 14 | |
| 15 # Convert the image into png format | |
| 16 cd $output_dir | |
| 17 | |
| 18 echo "<html><body>" >> $html | |
| 19 echo "<center> <h2> Cosine similarity comparison </h2> </center>" >> $html | |
| 20 | |
| 21 echo "<table>" >> $html | |
| 22 echo "<tr> <td> <center> <br/> <a href="Similarity_Matrix.txt">Similarity_Matrix.txt</a> </center> </td> </tr>" >> $html | |
| 23 echo "<tr>" >> $html | |
| 24 echo "<td><a href="Similarity_Matrix.png">" >> $html | |
| 25 echo "<img width="1000" src="Similarity_Matrix.png" /></a></td>" >> $html | |
| 26 echo "</tr>" >> $html | |
| 27 echo "</table>" >> $html | |
| 28 | |
| 29 exit 0 |