Mercurial > repos > iarc > mutspec

changeset 1:748b7a8b634c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iarc
date Thu, 21 Apr 2016 09:36:32 -0400
parents 8c682b3a7c5b
children 9d363eb081b5
files mutspecAnnot.xml mutspecCompare.xml mutspecFilter.xml mutspecNmf.xml mutspecSplit.xml mutspecStat.xml
diffstat 6 files changed, 71 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/mutspecAnnot.xml	Tue Apr 19 03:07:11 2016 -0400
+++ b/mutspecAnnot.xml	Thu Apr 21 09:36:32 2016 -0400
@@ -169,4 +169,15 @@
 
 </help>
 
+<citations>
+    <citation type="bibtex">
+        @ARTICLE{ardin_mutspec:_2016,
+            author = {Ardin et al},
+            keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions},
+            title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes},
+            url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z}
+        }
+    </citation>
+</citations>
+
 </tool>
--- a/mutspecCompare.xml	Tue Apr 19 03:07:11 2016 -0400
+++ b/mutspecCompare.xml	Thu Apr 21 09:36:32 2016 -0400
@@ -106,4 +106,16 @@
 
 </help>
 
+
+<citations>
+    <citation type="bibtex">
+        @ARTICLE{ardin_mutspec:_2016,
+            author = {Ardin et al},
+            keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions},
+            title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes},
+            url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z}
+        }
+    </citation>
+</citations>
+
 </tool>
\ No newline at end of file
--- a/mutspecFilter.xml	Tue Apr 19 03:07:11 2016 -0400
+++ b/mutspecFilter.xml	Thu Apr 21 09:36:32 2016 -0400
@@ -12,7 +12,7 @@
         $segDup
         $esp
         $thG
-	#if $FilterdbSNP.dbSNP == "true":
+	    #if $FilterdbSNP.dbSNP == True:
            --dbSNP ${FilterdbSNP.column}
         #else
            --dbSNP 0
@@ -94,4 +94,15 @@
 
 </help>
 
+<citations>
+    <citation type="bibtex">
+        @ARTICLE{ardin_mutspec:_2016,
+            author = {Ardin et al},
+            keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions},
+            title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes},
+            url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z}
+        }
+    </citation>
+</citations>
+
 </tool>
--- a/mutspecNmf.xml	Tue Apr 19 03:07:11 2016 -0400
+++ b/mutspecNmf.xml	Thu Apr 21 09:36:32 2016 -0400
@@ -105,4 +105,16 @@
 
 </help>
 
+
+<citations>
+    <citation type="bibtex">
+        @ARTICLE{ardin_mutspec:_2016,
+            author = {Ardin et al},
+            keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions},
+            title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes},
+            url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z}
+        }
+    </citation>
+</citations>
+
 </tool>
--- a/mutspecSplit.xml	Tue Apr 19 03:07:11 2016 -0400
+++ b/mutspecSplit.xml	Thu Apr 21 09:36:32 2016 -0400
@@ -82,4 +82,16 @@
 
 </help>
 
+
+<citations>
+    <citation type="bibtex">
+        @ARTICLE{ardin_mutspec:_2016,
+            author = {Ardin et al},
+            keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions},
+            title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes},
+            url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z}
+        }
+    </citation>
+</citations>
+
 </tool>  
--- a/mutspecStat.xml	Tue Apr 19 03:07:11 2016 -0400
+++ b/mutspecStat.xml	Thu Apr 21 09:36:32 2016 -0400
@@ -14,7 +14,7 @@
         mutspecStat_wrapper.sh
         $html
         ${GALAXY_DATA_INDEX_DIR}/shared/ucsc/chrom/
-        #if $estimateSignature.estimSign == "true":
+        #if $estimateSignature.estimSign == True:
               ${estimateSignature.estimT}
         #else
             0
@@ -154,4 +154,15 @@
 
 </help>
 
+<citations>
+    <citation type="bibtex">
+        @ARTICLE{ardin_mutspec:_2016,
+            author = {Ardin et al},
+            keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions},
+            title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes},
+            url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z}
+        }
+    </citation>
+</citations>
+
 </tool>