comparison prop_venn.xml @ 1:cc6707a1e044 draft default tip

added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested

0:8ea9b4e5a389

<tool id="prop_venn" name="proportional venn" version="0.4">
<description> from 2-3 sets</description>
<command interpreter="python">venner.py
	#if str( $twoThree['tt']) == 'three':
		--files $inputFile1,$inputFile2,$twoThree.inputFile3
		--columns $column1,$column2,$twoThree.column3
        --asNames $asName1,$asName2,$twoThree.asName3
    #else:
    	--file $inputFile1,$inputFile2
        --columns $column1,$column2
        --asNames $asName1,$asName2
    #end if
     --title '$title'
     --size $size
     --outname $outPath
</command>
<inputs>
  <param name="title" label="title" type="text" help="title of plot" optional="true" value=""/>
  <param name="name" label="name" type="text" help="name of output file" value="venn of NA"/>
  <param name="size" label="size" type="integer" help="size of plot ( &lt; 540)" optional="true" value="300"/>
  
  <param format="tabular" name="inputFile1" label="input file 1" type="data" help="tabular input file" optional="false"/>
  <param name="column1" label="column index" type="integer" help="0 based index of element column" optional="false" value="0"/>
  <param name="asName1" label="as name" type="text" help="nice name for columns on plot" optional="false" value="A"/>

  </when>
</conditional>
</inputs>

<outputs>
  <data name="outPath" format="html" label="${name}"/>
</outputs>

<help>

Proportional Venn Diagram:

1:cc6707a1e044

<tool id="prop_venn" name="proportional venn" version="0.5">
<description> from 2-3 sets</description>
<command interpreter="python">venner.py
	#if str( $twoThree['tt']) == 'three':
		--files $inputFile1,$inputFile2,$twoThree.inputFile3
		--columns $column1,$column2,$twoThree.column3
        --asNames "$asName1","$asName2","$twoThree.asName3"
    #else:
    	--file $inputFile1,$inputFile2
        --columns $column1,$column2
        --asNames "$asName1","$asName2"
    #end if
     --title '$title'
     --size $size
     --outname $outPath
</command>
<inputs>
  <param name="title" label="title" type="text" help="title of plot" optional="true" value=""/>
  <param name="size" label="size" type="integer" help="size of plot ( &lt; 540)" optional="true" value="300"/>
  
  <param format="tabular" name="inputFile1" label="input file 1" type="data" help="tabular input file" optional="false"/>
  <param name="column1" label="column index" type="integer" help="0 based index of element column" optional="false" value="0"/>
  <param name="asName1" label="as name" type="text" help="nice name for columns on plot" optional="false" value="A"/>

  </when>
</conditional>
</inputs>

<outputs>
  <data name="outPath" format="html" label="${title}"/>
</outputs>

<help>

Proportional Venn Diagram: