diff prop_venn.xml @ 1:cc6707a1e044 draft default tip

added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested

--- a/prop_venn.xml	Wed Jun 22 03:28:25 2011 -0400
+++ b/prop_venn.xml	Mon Sep 24 16:46:21 2012 +0200
@@ -1,14 +1,14 @@
-<tool id="prop_venn" name="proportional venn" version="0.4">
+<tool id="prop_venn" name="proportional venn" version="0.5">
 <description> from 2-3 sets</description>
 <command interpreter="python">venner.py
 	#if str( $twoThree['tt']) == 'three':
 		--files $inputFile1,$inputFile2,$twoThree.inputFile3
 		--columns $column1,$column2,$twoThree.column3
-        --asNames $asName1,$asName2,$twoThree.asName3
+        --asNames "$asName1","$asName2","$twoThree.asName3"
     #else:
     	--file $inputFile1,$inputFile2
         --columns $column1,$column2
-        --asNames $asName1,$asName2
+        --asNames "$asName1","$asName2"
     #end if
      --title '$title'
      --size $size
@@ -16,7 +16,6 @@
 </command>
 <inputs>
   <param name="title" label="title" type="text" help="title of plot" optional="true" value=""/>
-  <param name="name" label="name" type="text" help="name of output file" value="venn of NA"/>
   <param name="size" label="size" type="integer" help="size of plot ( &lt; 540)" optional="true" value="300"/>
   
   <param format="tabular" name="inputFile1" label="input file 1" type="data" help="tabular input file" optional="false"/>
@@ -43,7 +42,7 @@
 </inputs>
 
 <outputs>
-  <data name="outPath" format="html" label="${name}"/>
+  <data name="outPath" format="html" label="${title}"/>
 </outputs>
 
 <help>